PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0100271

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SRS

Protein Properties

Length: 389aa MW: 41131.1 Da PI: 7.1021

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0100271	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.3	3.4e-67	130	295	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..........aeaaskrkrel.. 78 t+sCqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpa+krrerqqq+ +a +++++++ +++kr re+ RcHm_v2.0_Chr2g0100271 130 STVSCQDCGNQAKKDCVHMRCRTCCKSRGFDCATHVKSTWVPASKRRERQQQHLTALQQQQQQHtqqevqvirgGGENPKRLRENsn 216 5789*******************************************88766655555554447889999884445555555422 PP DUF702 79 ....kskkqsal.sstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + +++s+l ++t++ ++++ le+ ++P+ev s+avfrcvrvss+dd+e+++aYqtav+i+GhvfkGiLy+qG+++ RcHm_v2.0_Chr2g0100271 217 nnpnNPSSNSSLgACTRII--TNTSGLEVGNFPAEVTSPAVFRCVRVSSIDDDEDQYAYQTAVNIAGHVFKGILYNQGPDT 295 2221122222221333333..3344577777**********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MAGFFSLGGG GGGGRSSHNP ESRNQNQPES SEIPPETLFW YKNEEGMPFK GSFELWQHQQ 60 QQLQHHQHQQ HQLQQLQLQQ DLYASAAALG VGPSSINVSD ESSSRPFMMM RPSSSGGGGG 120 GGGGGSTSGS TVSCQDCGNQ AKKDCVHMRC RTCCKSRGFD CATHVKSTWV PASKRRERQQ 180 QHLTALQQQQ QQHTQQEVQV IRGGGENPKR LRENSNNNPN NPSSNSSLGA CTRIITNTSG 240 LEVGNFPAEV TSPAVFRCVR VSSIDDDEDQ YAYQTAVNIA GHVFKGILYN QGPDTNYNMS 300 TAGESSSGGG GGGGGGGGGG GVIQPLNLIN AAPTTVGSGG VTVAAASGSG TLMDPNSLYP 360 VNPFMASGDH SWNLRLRSAL PQTPTCEQF

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MAGFFSLGGG GGGGRSSHNP ESRNQNQPES SEIPPETLFW YKNEEGMPFK GSFELWQHQQ  60
QQLQHHQHQQ HQLQQLQLQQ DLYASAAALG VGPSSINVSD ESSSRPFMMM RPSSSGGGGG  120
GGGGGSTSGS TVSCQDCGNQ AKKDCVHMRC RTCCKSRGFD CATHVKSTWV PASKRRERQQ  180
QHLTALQQQQ QQHTQQEVQV IRGGGENPKR LRENSNNNPN NPSSNSSLGA CTRIITNTSG  240
LEVGNFPAEV TSPAVFRCVR VSSIDDDEDQ YAYQTAVNIA GHVFKGILYN QGPDTNYNMS  300
TAGESSSGGG GGGGGGGGGG GVIQPLNLIN AAPTTVGSGG VTVAAASGSG TLMDPNSLYP  360
VNPFMASGDH SWNLRLRSAL PQTPTCEQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	2e-70	SRS family protein