PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0092381
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 386aa    MW: 42776.8 Da    PI: 6.4323
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0092381genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.3e-08139160426
                             ---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             + C++f++ G+Ck Gd+C FaHg
  RcHm_v2.0_Chr2g0092381 139 SACPDFRK-GHCKKGDSCEFAHG 160
                             67******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    
MMIGEPHRSN PTIHVPPWLT LDDPTAEMYS PYPLSGVSVN SDVTNANSPY HLNEALATLQ  60
RYLPSNEASD PDPDSDSEIS GMDSDSPVDA YSCDHFRMFE FKVRRCARGR SHDWTDCPFA  120
HPGEKARRRD PRKYHYSGSA CPDFRKGHCK KGDSCEFAHG VFECWLHPAR YRTQPCKDGT  180
SCKRRVCFFA HTPEQLRVLP QQSPRGSTSA ESYDGSPLRQ AMEAASLGKG MPFMSSPPSI  240
SPEDSPPVSP MTRSVSRSLG SSSINEMVAS LRNLQLGKVK SLPTSWNVQV GSPGFVSPRG  300
SMLRPGFCSL PSTPTRIPTR SAIGFLDFCD EGCEEEPPME RVESGRDLRA KMFERLREEN  360
SLERVDPTEP QASGAPDVGW VSELVN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-133C3H family protein