PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0090581

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 283aa MW: 32887.3 Da PI: 8.3322

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0090581	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1e-05	5	29	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ dC +++rk++L+rH+ H RcHm_v2.0_Chr2g0090581 5 YVCTidDCRSTYRRKDHLNRHLLQH 29 99*******************9887 PP
2	zf-C2H2	17.8	9.4e-06	74	98	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+ s L++H +H RcHm_v2.0_Chr2g0090581 74 HVCQepGCGKVFKFASKLRKHEDSH 98 689999***************9888 PP
3	zf-C2H2	13.2	0.00027	165	189	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C +Fs ksnL +H + H RcHm_v2.0_Chr2g0090581 165 KCDykGCLLTFSKKSNLLQHVKAvH 189 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MLRPYVCTID DCRSTYRRKD HLNRHLLQHQ GKLFKCPIEN CKSEFAFQGN VKRHVVEFHS 60 EDCPSTSVEG QKQHVCQEPG CGKVFKFASK LRKHEDSHVK LDSVEAFCSE PDCMKYFSNK 120 QCLKDHIQSC HTHITCEICG KKEWKKNIKS HLRTHEEGGS SLEIKCDYKG CLLTFSKKSN 180 LLQHVKAVHL QQKPFACSFS GCGKTFSYKH VRDKHEKSGC HVYAYGDFEE ADEQFRSRPR 240 GGRKRQCPTV EMLVRKRVTP PDQFGPETEF LSQFFSQEEE DEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	3e-98	C2H2 family protein