PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0089651
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 297aa    MW: 34013.2 Da    PI: 9.7198
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0089651genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.7e-1457137996
                             HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                      B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                             +vl++g l +p +f+e+++ k +   +  le+ s  sW v l  ++ s++++++kGW+eFv+ n Lk g+ +v++++g+ +f  +v 
  RcHm_v2.0_Chr2g0089651  57 SVLSTGKLKVPQDFCENFEVKVPH--QCHLETFS-GSWLVGL--KRISREFFFKKGWREFVEGNCLKLGEYMVLQYIGHAKF--NVE 136
                             79999**********888544333..47777755.59*****..*********************************98888..554 PP

                             E CS
                      B3  96 v 96 
                             +
  RcHm_v2.0_Chr2g0089651 137 I 137
                             4 PP
2B339.31.2e-12205286290
                             EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                               ++ + +v+k   l  p++f+++   k +++++l++ d    +Wev+ i+  +ks+   +++GW +Fv+ ngL+egD + F+l+++
  RcHm_v2.0_Chr2g0089651 205 SVQMCQTHVTKGP-LLTPRSFMRNTH-K-PKKVELQVGD---MVWEVNWIHpYQKSS--RFSGGWLRFVSHNGLQEGDLCDFELISK 283
                             5677777888777.555*****5554.3.2445555554...99****977544444..489*********************9975 PP

                             SEE CS
                      B3  88 sef 90 
                             +++
  RcHm_v2.0_Chr2g0089651 284 TNE 286
                             332 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MSLFSVTLLF LVPKGAKLIQ TPKRRGSKAN SVMGSCSRRR EDEGSENPGF YKCVDYSVLS  60
TGKLKVPQDF CENFEVKVPH QCHLETFSGS WLVGLKRISR EFFFKKGWRE FVEGNCLKLG  120
EYMVLQYIGH AKFNVEIYGL NRCNKMSKAG KSDRLLDDFD VIVVDSDSDS EIEFPRELVC  180
GRKLSRRGRP RNLATVNRSG NPCFSVQMCQ THVTKGPLLT PRSFMRNTHK PKKVELQVGD  240
MVWEVNWIHP YQKSSRFSGG WLRFVSHNGL QEGDLCDFEL ISKTNEVAVM NVSFRKM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.15e-12B3 family protein