PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0089571
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 540aa    MW: 59106.1 Da    PI: 5.9543
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0089571genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS429.62.5e-1311505151374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                             lv+lL++cAe v+ gdl+la +++++++ l  + +++  + ++a yf  AL++r++          ++  ++  +  ++   +++f+
  RcHm_v2.0_Chr2g0089571 150 LVQLLVTCAESVQRGDLALAGSIIETMRALltRVNTDCGIGKVAGYFIDALSRRVFT--------PQSVGSDGGSAHQNELLYHYFY 228
                             689**************************9655566679*****************9........22222222235555678899** PP

                    GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                             e++P+lkf+h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A+++
  RcHm_v2.0_Chr2g0089571 229 EACPYLKFAHFTANQAILEAFHGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSV 315
                             *************************************************************************************** PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +v+f f+ ++a+rled+++++L+v+p+Ea+aVn+++qlhrll ++ + +s+++ +L  +++l+Pk+v+vveqeadhn++ Flerf+e
  RcHm_v2.0_Chr2g0089571 316 NVRFAFRGVAASRLEDVKPWMLQVSPKEAVAVNSIMQLHRLLGSDSNRNSPIEMMLGWIRNLNPKIVTVVEQEADHNKAGFLERFTE 402
                             *************************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al+yys +fdslea    + + ++++ +++++rei+nvv+ceg +r+erhe l+kWr rle aGF+p++l+++a kqa++ll  ++ 
  RcHm_v2.0_Chr2g0089571 403 ALYYYSNMFDSLEAC--GAMQPDKTLAEMYIQREICNVVCCEGLARVERHEPLSKWRTRLELAGFSPLHLGSNAFKQASMLLTLFSA 487
                             ************998..4567788888899********************************************************* PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                             +gyrvee++g+l+lgW++rpL+++SaW+
  RcHm_v2.0_Chr2g0089571 488 EGYRVEEKEGCLTLGWHSRPLIAASAWQ 515
                             ***************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    
MEPYGNSGGV SSSASSSSSS SAASITKPHE MDGYLAEAGY MVRSSDLRHV AQRLERLENV  60
MVNSPNDLAH FASDAVIYNP SDLASWVDSL LSASDLSISD LDFPGVIINN HHTALPTADT  120
WAEIPPISAA PPQNHHQVTA VMEEDSGIRL VQLLVTCAES VQRGDLALAG SIIETMRALL  180
TRVNTDCGIG KVAGYFIDAL SRRVFTPQSV GSDGGSAHQN ELLYHYFYEA CPYLKFAHFT  240
ANQAILEAFH GHDCVHVIDF NLMHGLQWPA LIQALALRPG GPPLLRLTGI GPPSPDGRDS  300
LREIGLRLAE LARSVNVRFA FRGVAASRLE DVKPWMLQVS PKEAVAVNSI MQLHRLLGSD  360
SNRNSPIEMM LGWIRNLNPK IVTVVEQEAD HNKAGFLERF TEALYYYSNM FDSLEACGAM  420
QPDKTLAEMY IQREICNVVC CEGLARVERH EPLSKWRTRL ELAGFSPLHL GSNAFKQASM  480
LLTLFSAEGY RVEEKEGCLT LGWHSRPLIA ASAWQVMPLP EATATATNPL GIVNHSANHV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-128GRAS family protein