PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0087781

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 315aa MW: 35995.8 Da PI: 7.3556

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0087781	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.7e-17	22	67	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W +eEd++l+++v+ +G g+W+t++++ g++R +k+c++rw +yl RcHm_v2.0_Chr2g0087781 22 LWRPEEDLILKKYVETHGEGNWATVSKRSGLNRNGKSCRLRWKNYL 67 6*******************************************97 PP
2	Myb_DNA-binding	53.4	6.1e-17	73	118	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l RcHm_v2.0_Chr2g0087781 73 RGDMSQEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 118 7899****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence
MENKRVKALQ PEQPNSWNKK NLWRPEEDLI LKKYVETHGE GNWATVSKRS GLNRNGKSCR 60 LRWKNYLRPN IKRGDMSQEE EDLIIRMHKL LGNRWSLIAG RLPGRTDNEV KNYWNTHLNK 120 NNTACHCPAP APGGRRGRKR KTNDHDHYSD DTHHHQDNCQ CSNKRSKIIS STETTKTESI 180 TREEEPKYGI SSKEDDQSSS SIMSTMTATS YPYWMGDYSS NTDQSLNFDY ADIDHQYSPS 240 SSWVQYYLPT ITNNNATSSS TFVFDDEPFI AYMDSFLLLE AAFGCTSAAT ATSEGMQSSV 300 MMPLSSANDP HSPHF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	141	RRGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52600.1	5e-63	MYB family protein