PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0085911 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 420aa MW: 43096.7 Da PI: 6.5086 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.1 | 5.7e-12 | 218 | 263 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq RcHm_v2.0_Chr2g0085911 218 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 263 99***********************8.....6******************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence |
MNSLLNPQTP FDSSAHDDFL EQMLSTLGPS SCSSWADETP PAPPSAGNSD NNVVFSYDDS 60 SNLATKFRSH QISAGAAASK SSPTASAAAA AAMMLQHQLM MSRGGSSSSG NGAPMGLSLG 120 SNGDFNDIGD GSSFKSPNPG VVDGGSSVQA LFNGFTGSLS PNQPQHFHHH QGGALQAQNY 180 GAQAAAMTQP PANGSAGASA AQPRPRVRAR RGQATDPHSI AERLRRERIA ERMKALQELV 240 PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAGAV APLVTDMSSE GGGDCIQTSA 300 NGGTRAGRSG NQTASSNDSM TVTEHQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST 360 ATCHPRNPLM NGNNNPVITS NGGEGPSSPS MSVLTVQSAT MASNGGVDGS GKDAASVSKP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 223 | 228 | RLRRER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 1e-68 | bHLH family protein |