PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0382011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 310aa MW: 35286.8 Da PI: 8.391 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.3 | 1e-11 | 31 | 116 | 9 | 96 |
HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 lk g lp ++e+g+ + l+ g+ W+++l+ + +++r++l+kGW+eF++ L++gD+ +F+ +g+ s f RcHm_v2.0_Chr1g0382011 31 EDLKDGKKELPPAAVREYGHHL--ADHIYLKVpNCGKHWKIELRTSPRRDRMWLEKGWEEFANFYLLDQGDMATFSSEGEnSHF--Q 113 556777788999******9774..446888884579*******99999999*************************77755555..6 PP EEE CS B3 94 vkv 96 v++ RcHm_v2.0_Chr1g0382011 114 VSI 116 665 PP | |||||||
2 | B3 | 51.7 | 1.6e-16 | 220 | 308 | 14 | 99 |
T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE...EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliy.rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 r+ + fa+eh +k + +ltl++ +g ++W+++++ +++ gr ++ ++GWk F ++n+L+egD++v+++++ e++++v+ RcHm_v2.0_Chr1g0382011 220 FRVFINQAFASEHFYKADTCCDLTLQNNQGdKVWTIQCCSyKRSNGRiqaIISGAGWKAFRQDNHLEEGDVCVLEVIE--ERKCRVS 304 4789999******777778889*****9888*******6634444447879999*********************765..67778** PP EE-S CS B3 96 vfrk 99 +fr+ RcHm_v2.0_Chr1g0382011 305 IFRA 308 9996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence |
MASSSSLAGK GKRHAVQENS PAFCLRIFSR EDLKDGKKEL PPAAVREYGH HLADHIYLKV 60 PNCGKHWKIE LRTSPRRDRM WLEKGWEEFA NFYLLDQGDM ATFSSEGENS HFQVSIYSWD 120 DMEIEYPIRI GADVSTPDRK EIGAEALAVA MSVSPRSSAD ERGSAKVRRR RRRVTGSEAE 180 ARAISISPRS SADEHEYDVS SFRSDKPFLD IRIPAKTLAF RVFINQAFAS EHFYKADTCC 240 DLTLQNNQGD KVWTIQCCSY KRSNGRIQAI ISGAGWKAFR QDNHLEEGDV CVLEVIEERK 300 CRVSIFRAKK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 173 | RRRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 1e-09 | B3 family protein |