PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G49475.1 | ||||||||
Common Name | F13F21.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 190aa MW: 21997.1 Da PI: 5.7587 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.7 | 5e-14 | 45 | 123 | 13 | 98 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++++ +p +f+ ++g k + +tl+++ g + ++++ ++ +++++++kGW+eF++a+ L +g f+ F+++g+s+f +v +f+ AT1G49475.1 45 EKMMKVPARFV-RFGPK--LTDNVTLQTPVGFKRSIRI--KRIGDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCF--RVVIFD 123 356999****9.66533..5568***************..**************************************..888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.06E-21 | 28 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-18 | 29 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.34E-16 | 32 | 123 | No hit | No description |
PROSITE profile | PS50863 | 10.87 | 33 | 125 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-16 | 34 | 125 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.9E-12 | 45 | 123 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MRNMHTNRRS PGPITSAATQ RRLKPEPEPT VKKFIKIILL SRIIEKMMKV PARFVRFGPK 60 LTDNVTLQTP VGFKRSIRIK RIGDEVWFEK GWSEFAEAHS LSDGHFLFFH YEGDSCFRVV 120 IFDVSASEIE YPLDDTDDNR EEVMDDDEQG FTGFESSDDD GEVVDMDELL KKKKKKPRVN 180 IKSENVIILD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 176 | LKKKKKKP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.49960 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145361245 | 0.0 | ||||
Expression Atlas | AT1G49475 | - | ||||
AtGenExpress | AT1G49475 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G49475.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G49475 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007504 | 0.0 | AC007504.3 Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_683415.2 | 1e-138 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q9XIB4 | 1e-139 | Y1475_ARATH; B3 domain-containing protein At1g49475 | ||||
TrEMBL | A0A178WDC1 | 1e-135 | A0A178WDC1_ARATH; Uncharacterized protein | ||||
STRING | AT1G49475.1 | 1e-137 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 | Representative plant | OGRP1718 | 5 | 38 |
Link Out ? help Back to Top | |
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Phytozome | AT1G49475.1 |
Entrez Gene | 841371 |
iHOP | AT1G49475 |
wikigenes | AT1G49475 |
Publications ? help Back to Top | |||
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