PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0382001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 285aa MW: 32894.2 Da PI: 6.8521 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.9 | 1.3e-11 | 36 | 121 | 10 | 97 |
HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 lk g lp ++++g + + + + l+ g+ W+++l+ + +++r++l+kGW+eF++ L++gD +F+ +++ +++ ++ RcHm_v2.0_Chr1g0382001 36 DLKDGKKELPPAAVRKYGDQMADH--IFLKVpNCGKHWKIELRTSPRRDRMWLEKGWEEFASFYLLDQGDLATFSS-EDEHAHFQIR 119 566777889********9997775..777774579*******99999999*************************3.3366655666 PP EE CS B3 96 vf 97 +f RcHm_v2.0_Chr1g0382001 120 IF 121 65 PP | |||||||
2 | B3 | 48.6 | 1.5e-15 | 194 | 283 | 13 | 99 |
TT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesg.rsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++r+ + +fa eh k+ + +l+l+++ g r W+v++i +++ ++++ ++GWk+F ++n+L+egD++v++l++ e++++v RcHm_v2.0_Chr1g0382001 194 TNRVFINPEFALEHFCKEGSCCDLSLQNTLGdRIWTVQCISytisDGRMRTVISGAGWKSFRQDNHLEEGDVLVLELIE--ERRCRV 278 46799*********77788889******6666*******6667755555558889*********************996..555789 PP EEE-S CS B3 95 kvfrk 99 +++r+ RcHm_v2.0_Chr1g0382001 279 SIIRA 283 99886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence |
MKDWTFEMGE RSRNGKRPAV CEESKGFCLR IQSREDLKDG KKELPPAAVR KYGDQMADHI 60 FLKVPNCGKH WKIELRTSPR RDRMWLEKGW EEFASFYLLD QGDLATFSSE DEHAHFQIRI 120 FSWDDMEIYY PIRGGGVDVS GPNRKETRVE AEARAISISP RSSADEHQYD ISKVSSFRSD 180 KPCLNVQITA TSLTNRVFIN PEFALEHFCK EGSCCDLSLQ NTLGDRIWTV QCISYTISDG 240 RMRTVISGAG WKSFRQDNHL EEGDVLVLEL IEERRCRVSI IRAQK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 7e-08 | B3 family protein |