PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0380421
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Nin-like
Protein Properties Length: 349aa    MW: 39555.7 Da    PI: 5.1748
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0380421genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.71.8e-26237286352
                  RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                             +++++e+++kyF+lpi++AAkeL+v++T+LKr+CR+++I+RWPhRki+sl
  RcHm_v2.0_Chr1g0380421 237 DSLEFEEIKKYFDLPITKAAKELKVGVTLLKRRCRELNIMRWPHRKIRSL 286
                             789*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MGFQGLEDFS TWDFTALDIT TAVSSPSRCD NHVLDEKPLP TMVDSFDYLD NVPSDSGHGE  60
VSFKIETSGF SSSHCDSLVF DEKPLTTMVE SFTYLDNVPS DLGQHEVSMM TESCGFSSSH  120
CDSVVFNEKP ISTMVESFDN SNNVPSVLGP HEASMRTESA TAFASSHSNS LVLYEKPLST  180
IVDSFDYSDI PTPDLGHDEV SVMIENGFPS WDISDISCKR ETSNRRRYNT EMKIKSDSLE  240
FEEIKKYFDL PITKAAKELK VGVTLLKRRC RELNIMRWPH RKIRSLNSLI ETLKGMGLRN  300
EVKMLEENKR LLEQVPNMEL TKRTKKLRQS IFKANYNYKK QMSLSLLLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.12e-40Nin-like family protein