PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0380121

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 366aa MW: 40135.9 Da PI: 7.0706

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0380121	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.2	1.9e-29	148	209	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g+++pr+YYrCt++ gC ++k+v+rs+edp ++eitY+g+H+++ RcHm_v2.0_Chr1g0380121 148 LDDGFSWRKYGQKDILGAKYPRGYYRCTHRnvqGCLATKQVQRSDEDPMILEITYRGRHTCT 209 59*************************98999************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MGVNWVQKSG IVNELTRGRE LARQLQIHLN ATSTLNPSTS SQTALTREML IQKIISSYEK 60 ALSMLNSSSS APMPVAVEQL HQQQPTFTVA ASTGVVTIRM ADSPPSLNGS PRSEDSDDHK 120 DPSRKRKGLA RWTKQVRVTS GMGLEGPLDD GFSWRKYGQK DILGAKYPRG YYRCTHRNVQ 180 GCLATKQVQR SDEDPMILEI TYRGRHTCTQ AASTSVASPP PKPMSPLPDQ KPEPPQMNQQ 240 PQHNMLLSLP EGLRVITEGL DTSHDHRGEL LFPSFNNNNY AGNFSPSLTM PTASTSGTNY 300 FSVLSQQDFG GNQNLQISAA AESHDIISAA TSASNSPTVG LDFPFAEADH QILYPNFTFD 360 DPGFFP

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MGVNWVQKSG IVNELTRGRE LARQLQIHLN ATSTLNPSTS SQTALTREML IQKIISSYEK  60
ALSMLNSSSS APMPVAVEQL HQQQPTFTVA ASTGVVTIRM ADSPPSLNGS PRSEDSDDHK  120
DPSRKRKGLA RWTKQVRVTS GMGLEGPLDD GFSWRKYGQK DILGAKYPRG YYRCTHRNVQ  180
GCLATKQVQR SDEDPMILEI TYRGRHTCTQ AASTSVASPP PKPMSPLPDQ KPEPPQMNQQ  240
PQHNMLLSLP EGLRVITEGL DTSHDHRGEL LFPSFNNNNY AGNFSPSLTM PTASTSGTNY  300
FSVLSQQDFG GNQNLQISAA AESHDIISAA TSASNSPTVG LDFPFAEADH QILYPNFTFD  360
DPGFFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11070.1	2e-57	WRKY family protein