PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0378621

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 426aa MW: 45830.5 Da PI: 5.1609

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0378621	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.6	3.5e-30	231	289	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+edp+++++tY g+H h+ RcHm_v2.0_Chr1g0378621 231 SDLWAWRKYGQKPIKGSPHPRNYYRCSSSkGCSARKQVERSTEDPNMFVVTYCGDHSHP 289 799**********************998**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MEDDDWDLYA VVRSCKAVTT ARASLPVVTA PNPVHHDNSS VPSWMWDWVK HEEVETHVPP 60 VRFSNLEFRA GDGLEEFYQP FFPSPTIDNT TATTITTGTS SYAPAGTIIP NSSTSFISDF 120 GGGSTSSGQH QLQQQQNNFM PANTNTSPHF NPGFAPVSGL GRFPEQQLLK PPKLETPENL 180 EELIPRLKPV SLVGPAIPPM QIPPNLIRPR KRKSPVKKMV CHLAADNLSS SDLWAWRKYG 240 QKPIKGSPHP RNYYRCSSSK GCSARKQVER STEDPNMFVV TYCGDHSHPR PTHRNSLAGS 300 TRNKAAATTS KAKDPESPSV QLVPAQGGDD DEQAANSNSG DGDKASEEAE DEEMEEDEDD 360 EEFVVSSEDI FLGMKQLGRT GSGGSTLGSL AAGTSGDGFS TKQSNLGSSW GASCSSSAGA 420 TVSGGC

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MEDDDWDLYA VVRSCKAVTT ARASLPVVTA PNPVHHDNSS VPSWMWDWVK HEEVETHVPP  60
VRFSNLEFRA GDGLEEFYQP FFPSPTIDNT TATTITTGTS SYAPAGTIIP NSSTSFISDF  120
GGGSTSSGQH QLQQQQNNFM PANTNTSPHF NPGFAPVSGL GRFPEQQLLK PPKLETPENL  180
EELIPRLKPV SLVGPAIPPM QIPPNLIRPR KRKSPVKKMV CHLAADNLSS SDLWAWRKYG  240
QKPIKGSPHP RNYYRCSSSK GCSARKQVER STEDPNMFVV TYCGDHSHPR PTHRNSLAGS  300
TRNKAAATTS KAKDPESPSV QLVPAQGGDD DEQAANSNSG DGDKASEEAE DEEMEEDEDD  360
EEFVVSSEDI FLGMKQLGRT GSGGSTLGSL AAGTSGDGFS TKQSNLGSSW GASCSSSAGA  420
TVSGGC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	7e-51	WRKY family protein