PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0374861

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 252aa MW: 28181.5 Da PI: 5.1707

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0374861	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv+ + +G +W+++++ g++R++k+c++rw +yl RcHm_v2.0_Chr1g0374861 14 KGPWTAEEDKKLVNFILTHGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	49.4	1e-15	72	111	6	47
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + E++l +d+++ lG++ W++Ia++++ gRt++++k++w+++ RcHm_v2.0_Chr1g0374861 72 EAEEQLVIDLHASLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111 67*************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MGRQPCCDKL GVKKGPWTAE EDKKLVNFIL THGQCCWRAV PKLAGLRRCG KSCRLRWTNY 60 LRPDLKRGLL NEAEEQLVID LHASLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLIKMG 120 IDPITHAPLQ KQVTTTPQET PCEANIQQSV NIPEHGVSGN ENGSSATENS SSNEAQSLIE 180 VNANGDDDPL VNYILSDTGD TFLQDWSWNF PAVEDNYSDL GLSSTSSEDS SAWFMDCKDF 240 GVEDFELGYC IN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12350.1	1e-87	MYB family protein