PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0372441

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 350aa MW: 38755.9 Da PI: 6.4444

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0372441	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	72.8	4.5e-23	144	205	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +dDg +WrKYGqKe+ ++++pr+Y+rCt + gC+++k+v++ ++ pkv ++tY g+H+++ RcHm_v2.0_Chr1g0372441 144 VDDGQAWRKYGQKEILNAPYPRAYFRCTRKydqGCQATKQVQQVQDTPKVYKTTYIGNHTCR 205 58************************998899************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MATTWLEALP VDHKKVIMKN LVRGRKSATE LQSRLNNLSN GSTSLSAQEL VMEIVTSFTD 60 SLSVLSESSK LCGGDDDHQY SGTNGCGAGE IVKAEASHVE QSHCGDRSSE DSGESRKRPG 120 YKDRRGCYKR RKNSESWSIV SSTVDDGQAW RKYGQKEILN APYPRAYFRC TRKYDQGCQA 180 TKQVQQVQDT PKVYKTTYIG NHTCRNMIRG PQMIMGSTDP PTGDSHAPPR STVSSESGST 240 PICNKKEHHG VHGGHLPSSS SMIPFVPVKK EECKEGTTSS GLTDNLNDTS DVWPEFKDDH 300 HHDFGFPETT VMSNENAVSN MQFLDMDLVV KSINFENEFD FDEAAFPLGP

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MATTWLEALP VDHKKVIMKN LVRGRKSATE LQSRLNNLSN GSTSLSAQEL VMEIVTSFTD  60
SLSVLSESSK LCGGDDDHQY SGTNGCGAGE IVKAEASHVE QSHCGDRSSE DSGESRKRPG  120
YKDRRGCYKR RKNSESWSIV SSTVDDGQAW RKYGQKEILN APYPRAYFRC TRKYDQGCQA  180
TKQVQQVQDT PKVYKTTYIG NHTCRNMIRG PQMIMGSTDP PTGDSHAPPR STVSSESGST  240
PICNKKEHHG VHGGHLPSSS SMIPFVPVKK EECKEGTTSS GLTDNLNDTS DVWPEFKDDH  300
HHDFGFPETT VMSNENAVSN MQFLDMDLVV KSINFENEFD FDEAAFPLGP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	132	RKRPGYKDRRGCYKRRK
2	129	156	KRRKNSESWSIVSSTVDDGQAWRKYGQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	5e-45	WRKY family protein