PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0372431

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 348aa MW: 38669.9 Da PI: 6.6458

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0372431	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.9	8.4e-28	174	234	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqKe+ g +fpr+YYrCt++ +Cp+kk+v+r ++dp ++e++Y+g+H+++ RcHm_v2.0_Chr1g0372431 174 EDGFTWRKYGQKEIMGCRFPRGYYRCTHQklyNCPAKKQVQRLDNDPLTFEVMYRGDHTCH 234 7**************************999*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MDNISETVSL IHRGCNLARD LESNLPNLPS RPETVSKSLD EIIRVFGAAR ERLQSSSAAQ 60 HDPMSSYVHV AQQQQQIDAS LHEWLRCNYT QAMEDLHIQT QRFASEKSIA ATQTDMRDSG 120 ADVLHGQIHQ AIVSHELNAA SSSQSRPRRR RDDGEIRKLT VPAPRIGNTE IPPEDGFTWR 180 KYGQKEIMGC RFPRGYYRCT HQKLYNCPAK KQVQRLDNDP LTFEVMYRGD HTCHMSSTAP 240 SSLPPSDQIK QETMTQTHAV TTQPLGTWLS MDFNARGGGS SSGGRGDGDG DGVGTSITTT 300 TRYGKDVEFP VVDLADAMFN SGSSSSNSMD FMFTSSMDSK WESGDKKN

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MDNISETVSL IHRGCNLARD LESNLPNLPS RPETVSKSLD EIIRVFGAAR ERLQSSSAAQ  60
HDPMSSYVHV AQQQQQIDAS LHEWLRCNYT QAMEDLHIQT QRFASEKSIA ATQTDMRDSG  120
ADVLHGQIHQ AIVSHELNAA SSSQSRPRRR RDDGEIRKLT VPAPRIGNTE IPPEDGFTWR  180
KYGQKEIMGC RFPRGYYRCT HQKLYNCPAK KQVQRLDNDP LTFEVMYRGD HTCHMSSTAP  240
SSLPPSDQIK QETMTQTHAV TTQPLGTWLS MDFNARGGGS SSGGRGDGDG DGVGTSITTT  300
TRYGKDVEFP VVDLADAMFN SGSSSSNSMD FMFTSSMDSK WESGDKKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	8e-56	WRKY family protein