PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0361441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 215aa MW: 24505.6 Da PI: 6.1454 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.5 | 2.2e-35 | 10 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkya..t 70 lp+G+rF P+deelv++yL+kk ++k+ e++ +i+ ++++++ P+dL + ++++ + e+yf+s+r k++ + RcHm_v2.0_Chr1g0361441 10 LPKGLRFLPSDEELVSDYLEKKNQQKDPEIKAIISVINVCEHGPSDLAAlvprvkfldgeweftMADSPDMELYFYSPRVFKHStsK 96 799***************************889**************85689899999999775444466699******88887225 PP NAM 71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++r+nr+t++gyWk++gkd++++++ ++e++g k++L+fy r++ +ktdWv+hey l RcHm_v2.0_Chr1g0361441 97 STRSNRKTEEGYWKKQGKDRRITRArSDEQIGGKRILTFYL-RDK--QKTDWVIHEYYL 152 78*********************9867889**********4.333..58********87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence |
MMMSSGCITL PKGLRFLPSD EELVSDYLEK KNQQKDPEIK AIISVINVCE HGPSDLAALV 60 PRVKFLDGEW EFTMADSPDM ELYFYSPRVF KHSTSKSTRS NRKTEEGYWK KQGKDRRITR 120 ARSDEQIGGK RILTFYLRDK QKTDWVIHEY YLTKANSDEQ IGDFVLCRLK NKSGKSDHDQ 180 QDDPLCDGGE PNSGSCSMVS NVEDQGSKEL GTYGL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02230.1 | 3e-23 | NAC family protein |