PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G02230.1 | ||||||||
Common Name | ANAC004, NAC004, T7I23.19 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 359aa MW: 40896.4 Da PI: 6.5151 | ||||||||
Description | NAC domain containing protein 4 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 139.4 | 2.2e-43 | 4 | 132 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 p+GfrF+P+dee+v++yL++k +++ +++evi++vdi+++ePwdLp k ++k+++ wyfFs ++ ky++g++++r t+sg+Wk+tgk+ +v++k AT1G02230.1 4 PVGFRFRPNDEEIVDHYLRPKNLDSDtSHVDEVISTVDICSFEPWDLPsKsMIKSRDGVWYFFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKr 101 89******************9777664777889**************96347777888**************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g k++Lvf +++g+ktdWvmhey++ AT1G02230.1 102 gNREKIGEKRVLVFK---NRDGSKTDWVMHEYHA 132 77888*********7...78899*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 44.299 | 3 | 151 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.66E-46 | 3 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-24 | 4 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MMNPVGFRFR PNDEEIVDHY LRPKNLDSDT SHVDEVISTV DICSFEPWDL PSKSMIKSRD 60 GVWYFFSVKE MKYNRGDQQR RRTNSGFWKK TGKTMTVMRK RGNREKIGEK RVLVFKNRDG 120 SKTDWVMHEY HATSLFPNQM MTYTVCKVEF KGEETEISSS STGSEIEQIH SLIPLVNSSG 180 GSEGSSFHSQ ELQNSSQSGV FANVQGESQI DDATTPIEEE WKTWLNNDGD EQRNIMFMQD 240 HRSDYTPLKS LTGVFSDDSS DDNDSDLISP KTNSIGTSST CASFASSNHQ IDQTQHSPDS 300 TVQLVSLTQE VSQGPGQVTV IREHKLGEES VKKKRASFVY RMIHRLVKKI HQCYSISRT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-24 | 4 | 130 | 16 | 138 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145334984 | 0.0 | ||||
Expression Atlas | AT1G02230 | - | ||||
AtGenExpress | AT1G02230 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00122 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G02230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G02230 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493424 | 0.0 | AB493424.1 Arabidopsis thaliana At1g02240 mRNA for hypothetical protein, partial cds, clone: RAAt1g02240. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_171726.2 | 0.0 | NAC domain containing protein 4 | ||||
Swissprot | O81913 | 0.0 | NAC4_ARATH; NAC domain-containing protein 4 | ||||
TrEMBL | A0A178WK80 | 0.0 | A0A178WK80_ARATH; NAC004 | ||||
STRING | AT1G02230.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Link Out ? help Back to Top | |
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Phytozome | AT1G02230.1 |
Entrez Gene | 837630 |
iHOP | AT1G02230 |
wikigenes | AT1G02230 |
Publications ? help Back to Top | |||
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