PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0361191

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 417aa MW: 46500 Da PI: 6.2934

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0361191	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.1	1.6e-13	202	253	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A++++k+L+ RcHm_v2.0_Chr1g0361191 202 QRMTHIAVERNRRRQMNDHLNGLRSLMPPS---YIQRGDQASIVGGAIDFVKELE 253 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MERLQGPINP CFFGDHLDLQ CLEQGFTTTT TTHGLRFEEE EALYLSGFED RMPFLQMLQS 60 IDFPPCDFTQ KEPSFQALLR LQHKTGTTWP EMENTQSSQI HTLEALESCV TQDNQQQLYS 120 PAKSEGRDPH QNPLSVSGTL EGGGGVSSDC NREMQQLNSA KMGPNQTLQT QFTKSASSPA 180 TRERRKRKRT RPTKNKEEVE SQRMTHIAVE RNRRRQMNDH LNGLRSLMPP SYIQRGDQAS 240 IVGGAIDFVK ELEQHLQSLE AQKRMKRAEG FTTNVDPNNN NSLNSSSPSS SSAMAMPSNG 300 MFMSLSQCRI ASTEEGNTCG DDGVTAQNKS EAAEVDVTVI QTHVNLKVQC QKRPGQLVRA 360 LIALEDLRLT VLHLNITSSE DTVLYSFNLK IEEGCKLGSA DNIARAVHQI FSFINGS

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MERLQGPINP CFFGDHLDLQ CLEQGFTTTT TTHGLRFEEE EALYLSGFED RMPFLQMLQS  60
IDFPPCDFTQ KEPSFQALLR LQHKTGTTWP EMENTQSSQI HTLEALESCV TQDNQQQLYS  120
PAKSEGRDPH QNPLSVSGTL EGGGGVSSDC NREMQQLNSA KMGPNQTLQT QFTKSASSPA  180
TRERRKRKRT RPTKNKEEVE SQRMTHIAVE RNRRRQMNDH LNGLRSLMPP SYIQRGDQAS  240
IVGGAIDFVK ELEQHLQSLE AQKRMKRAEG FTTNVDPNNN NSLNSSSPSS SSAMAMPSNG  300
MFMSLSQCRI ASTEEGNTCG DDGVTAQNKS EAAEVDVTVI QTHVNLKVQC QKRPGQLVRA  360
LIALEDLRLT VLHLNITSSE DTVLYSFNLK IEEGCKLGSA DNIARAVHQI FSFINGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	189	RRKRKR
2	203	214	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01460.1	2e-70	bHLH family protein