PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0361001

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 348aa MW: 39727.3 Da PI: 6.3921

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0361001	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.3	2.5e-52	15	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWk 84 +ppGfrFhPt+eel+++yL+kkv+g++++l +vi+evd++k+ePwd ++k++ +++wyfFs++dkky+tg+r+nrat++g+Wk RcHm_v2.0_Chr1g0361001 15 VPPGFRFHPTEEELLQYYLRKKVSGQRIDL-DVIREVDLNKLEPWDVQEKCNIgttPQNDWYFFSHKDKKYPTGTRTNRATAAGFWK 100 69**************************.9***********964444222455************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+dk + s + + +g++ktLvfykgrap+g+k+dW+mheyrl RcHm_v2.0_Chr1g0361001 101 ATGRDKVIRS-NCKRIGMRKTLVFYKGRAPRGQKSDWIMHEYRL 143 ****99.8889*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MTENMSISVN GQSQVPPGFR FHPTEEELLQ YYLRKKVSGQ RIDLDVIREV DLNKLEPWDV 60 QEKCNIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIRS NCKRIGMRKT 120 LVFYKGRAPR GQKSDWIMHE YRLDDNTSRI TDVSVVVGEA SQEEGWVVCR IFKKKNLHKT 180 IDSPILIAPT SSITTDNITS IFVSSCDYND EETLKHILDC MGSRTCKEKT NEANNSLIMN 240 HIHGFHDDDD RFLNLPSLES PNSSAENDDP VGHQSVDLVG LTNWAALDRF VAAQLDGRET 300 MTYPESGNCF STDHHDYHDH ELQLPTTLRS SNSSSNVIEL WPTFAPHR

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MTENMSISVN GQSQVPPGFR FHPTEEELLQ YYLRKKVSGQ RIDLDVIREV DLNKLEPWDV  60
QEKCNIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIRS NCKRIGMRKT  120
LVFYKGRAPR GQKSDWIMHE YRLDDNTSRI TDVSVVVGEA SQEEGWVVCR IFKKKNLHKT  180
IDSPILIAPT SSITTDNITS IFVSSCDYND EETLKHILDC MGSRTCKEKT NEANNSLIMN  240
HIHGFHDDDD RFLNLPSLES PNSSAENDDP VGHQSVDLVG LTNWAALDRF VAAQLDGRET  300
MTYPESGNCF STDHHDYHDH ELQLPTTLRS SNSSSNVIEL WPTFAPHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-115	NAC family protein