PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0360811

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 487aa MW: 53990.3 Da PI: 5.4961

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0360811	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.3	2.4e-12	305	350	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L RcHm_v2.0_Chr1g0360811 305 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINDL 350 799*********************6.....4**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MDDLIISPSS SSSLVSLPQE PTLQQRLQFI LQSQPELWSY AIFWQASNDV ENGRLLLGWG 60 DGHFQCPKNP SPNHNNNNSN SLSSSGGALH SDRRKILKGI QSILNDNNPE LDMDNFMALN 120 GDVSDAEWFY VLSLTRSFAV GDGSVPGKAF GSGTSIWLSG AHELQFNNNC ERAKEAQIHG 180 IETLICIPTS DGVLEMGSSG LIRENWGLIQ QAKSMFGSDQ PDPETRPLEF INRNFSFADI 240 GIIAGVQEED HSSYNDDKKH VFGSSKKKNG APNPNPDFAD SDCQMKRAPK KRGRKPGLGR 300 DTPLNHVEAE RQRREKLNHR FYALRAVVPN VSRMDKASLL SDAVSYINDL KAKVDELESK 360 LQRESKKVKV EMADNQDNQS TTTTASVEQT QTVRPDINNT NNGSALEIEV KIVGTDAMIR 420 VQSENVNYPS ARLMTAMRDL EFRIHHASLS SINDLMLQDI VVKVPDNMRS EEGLKAALLG 480 ILDQNQA

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MDDLIISPSS SSSLVSLPQE PTLQQRLQFI LQSQPELWSY AIFWQASNDV ENGRLLLGWG  60
DGHFQCPKNP SPNHNNNNSN SLSSSGGALH SDRRKILKGI QSILNDNNPE LDMDNFMALN  120
GDVSDAEWFY VLSLTRSFAV GDGSVPGKAF GSGTSIWLSG AHELQFNNNC ERAKEAQIHG  180
IETLICIPTS DGVLEMGSSG LIRENWGLIQ QAKSMFGSDQ PDPETRPLEF INRNFSFADI  240
GIIAGVQEED HSSYNDDKKH VFGSSKKKNG APNPNPDFAD SDCQMKRAPK KRGRKPGLGR  300
DTPLNHVEAE RQRREKLNHR FYALRAVVPN VSRMDKASLL SDAVSYINDL KAKVDELESK  360
LQRESKKVKV EMADNQDNQS TTTTASVEQT QTVRPDINNT NNGSALEIEV KIVGTDAMIR  420
VQSENVNYPS ARLMTAMRDL EFRIHHASLS SINDLMLQDI VVKVPDNMRS EEGLKAALLG  480
ILDQNQA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	2e-79	bHLH family protein