PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0351841

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 307aa MW: 32831.2 Da PI: 8.7591

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0351841	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.8	1.3e-36	57	127	3	73
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ RcHm_v2.0_Chr1g0351841 57 PKRSSTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAM 127 799************************************************************88888444 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MLQNQEFEPG QHTAAAAGVD PTDRAETDSP PSQALVLKEE HEPEQRSPAL TMAVSKPKRS 60 STKDRHTKVE GRGRRIRMPA TCAARIFQLT RELGHKSDGE TIRWLLEHAE PAIIAATGTG 120 TVPAIAMSVN GSLKIPTTAP DPKPGDPSKK RKRPCNSDYV DLNDSVSAGL APLTTTTLQQ 180 PTPPPPPQPV HQSMVPMWAV TSNGVVPGTF FMVPQTQAPH LFTFPATAAA SPFLNMSARP 240 ISSFVSSMGN VAAPVSNTLS FLSPVPIPPA SATITNSTDA TTTTLRDFTL EIRDKTELQF 300 MSGSSKH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	6e-70	TCP family protein