PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0351691 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24719.1 Da PI: 8.9288 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.2 | 2.4e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRr g+lKKA+ELS+LCdaeva+iifs++gklye++s RcHm_v2.0_Chr1g0351691 10 RIENATSRQVTFSKRRSGLLKKAFELSILCDAEVALIIFSPRGKLYEFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 79.6 | 7.8e-27 | 77 | 173 | 3 | 99 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 ++++ks++++++ +l++e++ + k+ie L+ ++R+llGe+L+ +s+ eLq++eqqLe+s+++iR++K ++++eqie+l++ke+ l RcHm_v2.0_Chr1g0351691 77 QANNKSVASEQNVQLKHEATSMMKQIEHLEVSKRKLLGESLGLCSIDELQEIEQQLERSVNSIRARKAQVYKEQIEQLREKERVLTA 163 34455599999999************************************************************************* PP K-box 90 enkaLrkkle 99 en++L++k e RcHm_v2.0_Chr1g0351691 164 ENQRLNEKCE 173 ******9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence |
MVRGKTQMRR IENATSRQVT FSKRRSGLLK KAFELSILCD AEVALIIFSP RGKLYEFASN 60 SMQTTIERYE KHTKDNQANN KSVASEQNVQ LKHEATSMMK QIEHLEVSKR KLLGESLGLC 120 SIDELQEIEQ QLERSVNSIR ARKAQVYKEQ IEQLREKERV LTAENQRLNE KCEAMQPRQP 180 VSEQRENLAC PESSPSSDVE TELFIGLPER RSKH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 159 | LREKER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 4e-81 | MIKC_MADS family protein |