PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0350881 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | GRF | ||||||||
Protein Properties | Length: 444aa MW: 48611.5 Da PI: 9.0526 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.6 | 2.9e-25 | 111 | 156 | 1 | 46 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 d+epgrCrRtDGKkWRCsr+v++++k+CE+H+hrgr+rsrk++e+s RcHm_v2.0_Chr1g0350881 111 DTEPGRCRRTDGKKWRCSRDVVPDEKYCEKHMHRGRHRSRKPVETS 156 689***************************************9975 PP | |||||||
2 | WRC | 71.3 | 1.1e-22 | 328 | 369 | 2 | 43 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 epgrCrRtDGKkWRC+r+vl+++k+C+rH+hrg ++ r+s+ RcHm_v2.0_Chr1g0350881 328 LEPGRCRRTDGKKWRCKREVLPDQKYCDRHIHRGVKQMRTSG 369 59*********************************9998875 PP | |||||||
3 | QLQ | 43.3 | 1.1e-15 | 46 | 80 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT aQl +L++Q l+yKy+aa++P P +L+++i+k RcHm_v2.0_Chr1g0350881 46 FTVAQLDELEHQRLVYKYIAAGLPAPFQLVLPIWK 80 9********************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence |
MDDTQVVKVK HEDDEGSPPP SIKLGLSIGG DGGDCEVVGK RRRSEFTVAQ LDELEHQRLV 60 YKYIAAGLPA PFQLVLPIWK SVAAGFSNAA FYQQYPSFLG YGGFDYRSKM DTEPGRCRRT 120 DGKKWRCSRD VVPDEKYCEK HMHRGRHRSR KPVETSQVTS PPSTKLLKNS DGELLNSKKN 180 LQIQTPKGLQ LMAQPSNNGS VSHSQTTFSS GYHELPKNIS TVAHTTSTPS YRTAVTPAAV 240 APSTTAGQVI ATASTCNDNN IWIGVKDYGC NYHAGNYGII RGSRNNINVG SNISSGSGFS 300 PKSVLQAGHM ILVNCNGLYF DNRRGEELEP GRCRRTDGKK WRCKREVLPD QKYCDRHIHR 360 GVKQMRTSGP VTAASTLATA MNSTRPSQTT GIAGETDCAI PNTNLTMSIP ARSPLMQNDE 420 KSDSTSDSDA TITDTSLAAY EQLI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 4e-34 | GRF family protein |