PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0350161
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 449aa    MW: 51547.6 Da    PI: 4.4295
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0350161genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87e-17997198
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                      B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                            ffk+l     + s+ l++p  f+++++g+ +e  + +l++   ++W v +  +k + +y+++kGW+eFv++ngL++++++vF+++g+s+
  RcHm_v2.0_Chr1g0350161  9 FFKIL--LGDHFSHKLIIPGAFLKHFDGNVPE--QFRLQT-PAKTWLVDV--EKVDHKYYFQKGWNEFVSENGLRVKEILVFHYTGNSD 90
                            67777..44555666********888666555..488777.569******..************************************9 PP

                            E..EEEEE- CS
                      B3 90 felvvkvfr 98
                            f   v ++ 
  RcHm_v2.0_Chr1g0350161 91 F--SVDIYG 97
                            9..777765 PP
2B336.68.3e-12327408995
                             HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                      B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                             ++ + + l +p +fa+++  k+++   +t+   +g sW vk+ y +++ r    +GW+ F++ n+Lke D++vF l+++ +f + v 
  RcHm_v2.0_Chr1g0350161 327 SYARGSYLNFPFDFAKRYLRKQPS--NVTFLA-DGVSWPVKFHYPQNQTR--AVAGWSAFARVNKLKESDVCVFVLTDDIKFVFSVV 408
                             455556789999******655444..577776.9********88555555..458********************998877755555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    
MARRRDPSFF KILLGDHFSH KLIIPGAFLK HFDGNVPEQF RLQTPAKTWL VDVEKVDHKY  60
YFQKGWNEFV SENGLRVKEI LVFHYTGNSD FSVDIYGKNT IKKVFVKESH AFPRSKDVGI  120
PTDIDYPMEE ADEDDDPSVE ILDDVAPYPT SRGEKYQISS PLPHIDYDLD IQDNIYDENK  180
HESYKNEEDE IEEDVDNEDE DEHESEEEDE DESLSEEENE TAEDVDFGDE DQNESEEENE  240
SEDEDHNDDD DDGDDNDDSI EILSEKPPCS KTRDAGGSSR TGSFRKPEIP KKMNLAMEVG  300
KHNALQRALD FKSKSVNPCL VLPMRASYAR GSYLNFPFDF AKRYLRKQPS NVTFLADGVS  360
WPVKFHYPQN QTRAVAGWSA FARVNKLKES DVCVFVLTDD IKFVFSVVIF HITGAANCTL  420
PSPGRRQTAT AQLKSKNNKR KPDRRSNRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-14B3 family protein