PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0348581

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 327aa MW: 36426.9 Da PI: 8.7609

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0348581	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.4	3.2e-41	176	253	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh l efD++krsCr+rLa+hn+rrrk+q+ RcHm_v2.0_Chr1g0348581 176 RCQAEGCHADLSQAKHYHRRHKVCEFHSKASTVIANGLTQRFCQQCSRFHLLAEFDNGKRSCRKRLADHNRRRRKTQQ 253 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MLDYEWANPS SVMLDESESV NGSDPNRHLH HHNSILDHYS STQAAFNNLL PPQPHQQQQQ 60 SAGSAFAHHF NQAQAQAHQV HSLFDPSVFA SASSYAPTSA HHHPHHSVLT LDPSIPGHHG 120 LVLIPKSEDV CPPADFATRI GLNLGGRTYF SSEDDFMNRL YRRSRPADHG PINSPRCQAE 180 GCHADLSQAK HYHRRHKVCE FHSKASTVIA NGLTQRFCQQ CSRFHLLAEF DNGKRSCRKR 240 LADHNRRRRK TQQPNQENRS SQQRQEGTRN SSSDNVTKSP AESAGHSSSA VTVALSPPRM 300 GLDCFRPRQY QNTTSSGSSS SLFFSSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	9e-70	SBP family protein