PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0347641 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 239aa MW: 26514.4 Da PI: 5.6486 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.7 | 2.5e-17 | 86 | 136 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp++ng r++lg++ tae A a+++a+ k++g RcHm_v2.0_Chr1g0347641 86 HFRGVRRRP-WGKYAAEIRDPKKNG--MRVWLGTYETAEHAGLAYDRAAFKMRG 136 69*******.***********9998..*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MSIETESFSN SDWALLESIR QHLLDDDFDT QLGFFADSPA QRTSSSNSTE ISNSDAEIVG 60 RNQAFTSEFE EVAAEREHHA PSAPRHFRGV RRRPWGKYAA EIRDPKKNGM RVWLGTYETA 120 EHAGLAYDRA AFKMRGSKAK LNFPHLIGAH DMEVGRVFPK RASPEPASPS STTSSEDGSP 180 KPKRRRGGGD SAAAKAKLDE AAREFQLFQV DSFTFGNELL VEDMVLLSPS ECSDILSFL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 4e-38 | ERF family protein |