PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0334901

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 592aa MW: 66265.6 Da PI: 4.4058

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0334901	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.9	1.9e-53	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 l+pGfrFhPt eelv++yLk+kv+gk++++ ++i+ vdiyk+ePwdLp k k+k++++ewyfFs dkky +++r+nrat++gyWk+ RcHm_v2.0_Chr1g0334901 9 LAPGFRFHPTGEELVWYYLKRKVAGKSFRF-DAISVVDIYKIEPWDLPgKsKLKSRDTEWYFFSLLDKKYGNSSRTNRATEKGYWKT 94 579************************9.99**********96358889999************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkd++v++ ++++vg+kktLvf++grapkg +t+Wvmheyrl RcHm_v2.0_Chr1g0334901 95 TGKDRPVCH-NSRAVGMKKTLVFHSGRAPKGARTNWVMHEYRL 136 *****.999**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence
MGRQSSQSLA PGFRFHPTGE ELVWYYLKRK VAGKSFRFDA ISVVDIYKIE PWDLPGKSKL 60 KSRDTEWYFF SLLDKKYGNS SRTNRATEKG YWKTTGKDRP VCHNSRAVGM KKTLVFHSGR 120 APKGARTNWV MHEYRLDNQE LEKAGIIEKD AYVLCRIFQK SGTGPKNGEQ YGAPFIEEEW 180 DEEDEVYGPG EEAIANEVAV SGGPYTEANE LSDGGYVEAI DLDQIDTGVP ESGPRPLNFY 240 HGETSNYIEQ SGDLVEDAAK TAVGAGETLE YCEEQKYFDL PEQYEMEAKP VKVEYLTSDY 300 HDNQNFFNLP EYYETETKEV KDEYVEPSHN MNPVDVSYSL NDPYLNATEN PPFGDGQFLE 360 TNDLSIPANP VEPNSAGFDM LDEYLTYFDA DDDISQYIDF DSCGMLGNEN TVPSEPLVEQ 420 SVMGETQPLS TGSQHLVEAH DVNDASSSKQ KPDMKFVSDG KFPFITKASH MLGSIPAPPA 480 FASEFPPKDA IRRLNSEVAS SSSVHAGMIR IRDITSSDNR VEWSIGKDGV VNLVFSVQLP 540 QSDVTSSNLV PMGGSVSGKT GSVVMRGWFL FMFFWVLFIS ISFKIGSYIY AK

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence

MGRQSSQSLA PGFRFHPTGE ELVWYYLKRK VAGKSFRFDA ISVVDIYKIE PWDLPGKSKL  60
KSRDTEWYFF SLLDKKYGNS SRTNRATEKG YWKTTGKDRP VCHNSRAVGM KKTLVFHSGR  120
APKGARTNWV MHEYRLDNQE LEKAGIIEKD AYVLCRIFQK SGTGPKNGEQ YGAPFIEEEW  180
DEEDEVYGPG EEAIANEVAV SGGPYTEANE LSDGGYVEAI DLDQIDTGVP ESGPRPLNFY  240
HGETSNYIEQ SGDLVEDAAK TAVGAGETLE YCEEQKYFDL PEQYEMEAKP VKVEYLTSDY  300
HDNQNFFNLP EYYETETKEV KDEYVEPSHN MNPVDVSYSL NDPYLNATEN PPFGDGQFLE  360
TNDLSIPANP VEPNSAGFDM LDEYLTYFDA DDDISQYIDF DSCGMLGNEN TVPSEPLVEQ  420
SVMGETQPLS TGSQHLVEAH DVNDASSSKQ KPDMKFVSDG KFPFITKASH MLGSIPAPPA  480
FASEFPPKDA IRRLNSEVAS SSSVHAGMIR IRDITSSDNR VEWSIGKDGV VNLVFSVQLP  540
QSDVTSSNLV PMGGSVSGKT GSVVMRGWFL FMFFWVLFIS ISFKIGSYIY AK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	1e-138	NAC family protein