PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0334761
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 587aa    MW: 66112.3 Da    PI: 4.7181
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0334761genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS276.96e-852205851374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             lve Ll+ Ae v  ++ e+a++lL   + l+s +g+p++R+++yf eAL+ ++ r++ ++ ++ ++ + ++  ++++ ++l + ++ 
  RcHm_v2.0_Chr1g0334761 220 LVEFLLASAEKVGYQQYERASKLLDLCERLCSDRGNPVERVVFYFCEALRDKIDRETGRTTHKKQSFDIDKAMMITNETSL-ACHNK 305
                             57889**************************************************66555555555555444444443333.36777 PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                              P+ ++++++  q I+e v ++++vH+iD++i  G+QW  L+qaLasR+ +   l+i +vg     ske++++tg+ L++fA+++++
  RcHm_v2.0_Chr1g0334761 306 IPFCQIAQFAGIQGIVEKVVEAKKVHVIDLEIRSGVQWTVLMQALASRDFPLELLKISAVGT----SKETIQNTGKWLESFAKTMNL 388
                             8*************************************************************....********************* PP

                    GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                             pf+f+++++ ++ dl+ ++++++++E++aV   + l +++ ++  les    ++k++k++ P v vv+e ea+hns+ F++rf+eal
  RcHm_v2.0_Chr1g0334761 389 PFSFKMVLVPDMLDLKEDMFELDSEETVAVYTEFVLRSMVPQPDRLES----LMKVIKNIHPSVTVVTEVEANHNSPVFVTRFIEAL 471
                             *******999*****************************977777777....*********************************** PP

                    GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347
                              ++sa+fd++e+ + +++  r+++E +++g+ i+n+va+eg+er+ r+ +   Wr+ + + G+++++ls++   qa+l+ ++++ ++
  RcHm_v2.0_Chr1g0334761 472 FFFSAFFDCVETCIEQNEPIRKSLESQYFGNGIKNIVATEGEERKIRNVKIDVWRAFFARYGMEEMELSSSSLYQAELVAKNFPcGN 558
                             ************************************************************************************999 PP

                    GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                               ++  + ++l+ gWk+ pL s+S W+
  RcHm_v2.0_Chr1g0334761 559 SCTITMDGKTLIAGWKGTPLQSLSLWK 585
                             9*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    
MANTMSSFGE FNFGGFQDKL GSTVENMEVE SIGGKQIYEA ENWGGFGSLC SDYGIYGNGF  60
SDFTKYQQQD QQQQPQLISD YGVFDDMQFQ FGALSPPLQA CLEEIAKLES IPTLVPHVEP  120
PKKELKRDSF SVAGLDLLNN YGSGFKRLNG ERIVEPNPYP GYTEVKSSKL STEEIVRVAG  180
ARFVRTASQV SPSDIPSMLS HPFELSFAGL SNEESRDVEL VEFLLASAEK VGYQQYERAS  240
KLLDLCERLC SDRGNPVERV VFYFCEALRD KIDRETGRTT HKKQSFDIDK AMMITNETSL  300
ACHNKIPFCQ IAQFAGIQGI VEKVVEAKKV HVIDLEIRSG VQWTVLMQAL ASRDFPLELL  360
KISAVGTSKE TIQNTGKWLE SFAKTMNLPF SFKMVLVPDM LDLKEDMFEL DSEETVAVYT  420
EFVLRSMVPQ PDRLESLMKV IKNIHPSVTV VTEVEANHNS PVFVTRFIEA LFFFSAFFDC  480
VETCIEQNEP IRKSLESQYF GNGIKNIVAT EGEERKIRNV KIDVWRAFFA RYGMEEMELS  540
SSSLYQAELV AKNFPCGNSC TITMDGKTLI AGWKGTPLQS LSLWKFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-39GRAS family protein