PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0334751
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 432aa    MW: 48375.6 Da    PI: 6.7533
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0334751genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS250.65.9e-77554281374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfse 86 
                             l +lLl++A+ v +++  +a++l +  + l+s++g+++qR++ yf +AL++r  r ++ +++k  ++++   ++ ++++a   +f+ 
  RcHm_v2.0_Chr1g0334751  55 LAHLLLAFADKVGKQQYDRARKLQNLCHFLSSSTGNTVQRVVYYFSKALRERTDReTGRNTSKGSESKDLLAMHLENTIACCPAFFA 141
                             579******************988888888*************************77788888888888888889999999888988 PP

                    GRAS  87 vs...PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfA 169
                             ++   P++++++++  qaI+e+v++++rvH iD++i  G++ + L+qaLasR e+p  +l++T+vgs  + s+++le tg+rLa+fA
  RcHm_v2.0_Chr1g0334751 142 CFlklPFYQVTQFAGIQAIVESVASAKRVHFIDLEIRSGGHCIVLMQALASRCEQPIeMLKVTAVGS-GTASRQKLEDTGKRLAQFA 227
                             86666***********************************************9666559********.5579*************** PP

                    GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                             e+l++pf+f++ +++++++l+ + ++ + gEa+aV + l+  ++     +l+++ ++ +  +++l+P ++v++e ea++ s+ F +r
  RcHm_v2.0_Chr1g0334751 228 EALHLPFSFKIATVTDINNLNEDGFESEDGEATAVYCCLMRSSMR----TLPDCLESAITELRKLNPCLMVITEIEANLYSPVFEDR 310
                             ***********9999************************777776....55555566****************************** PP

                    GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                             f  a+ yysa fd+l++ + + s  r+ +E+ +l+++i+n++a e++ r+ rh +   Wr+ + ++G+ +++ls +   qa+l  ++
  RcHm_v2.0_Chr1g0334751 311 FNAAVFYYSAYFDCLDVCMDNSSPYRRELEETFLAQQITNIIASEEE-RKFRHMKIDVWRSLFAKFGMVEAELSLSSLYQADLTAKQ 396
                             *******************************************9987.699************************************ PP

                    GRAS 344 vk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             ++ ++  +++ + ++l++gWk+ +++s+S+W+
  RcHm_v2.0_Chr1g0334751 397 FAcGKSCTLDMNGKCLTIGWKGTTILSLSSWK 428
                             **9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    
MSSVCRLSTV EIMRAAGARF IQFSSQKYAD DSIPKHVLGC APIGLSDQEV KEVELAHLLL  60
AFADKVGKQQ YDRARKLQNL CHFLSSSTGN TVQRVVYYFS KALRERTDRE TGRNTSKGSE  120
SKDLLAMHLE NTIACCPAFF ACFLKLPFYQ VTQFAGIQAI VESVASAKRV HFIDLEIRSG  180
GHCIVLMQAL ASRCEQPIEM LKVTAVGSGT ASRQKLEDTG KRLAQFAEAL HLPFSFKIAT  240
VTDINNLNED GFESEDGEAT AVYCCLMRSS MRTLPDCLES AITELRKLNP CLMVITEIEA  300
NLYSPVFEDR FNAAVFYYSA YFDCLDVCMD NSSPYRRELE ETFLAQQITN IIASEEERKF  360
RHMKIDVWRS LFAKFGMVEA ELSLSSLYQA DLTAKQFACG KSCTLDMNGK CLTIGWKGTT  420
ILSLSSWKFH AA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-45GRAS family protein