PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0328791
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 332aa    MW: 35340.2 Da    PI: 6.936
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0328791genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011129151123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC+ C + Fs++  L  H++ H
  RcHm_v2.0_Chr1g0328791 129 FKCNFCQRKFSTSQALGGHQNAH 151
                             89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MKKPGAVEAC PLESQVASEV PSSPSSLPKE GGDGDDKSNM KMKEKVIVLI DEPQQSLEKE  60
KEAAVGGSTS SGVVLDMTPS NQGPPGRSNL ELALFNSSSS QLVPEVVEVE EGSDENPAAR  120
DQKKEPRVFK CNFCQRKFST SQALGGHQNA HKQERQLAKR RSQAFDHMGG LGHSHFPYYS  180
PYSGFSTHSL YGSYNRSSLG VRMDSMIHKP SYTPWSQTYG RFGVALGGAA SGLGGGASGW  240
SRPGSSLINC IDQHRLTSLQ GLQNNINELG LAGRTATAPR FEQGSTSGLQ NFGGSNLSAL  300
NNRVPPTNGA DLLRQAEPPQ CDTDGAGLDL VC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.14e-22C2H2 family protein