PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0328631 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NF-YC | ||||||||
Protein Properties | Length: 59aa MW: 6721.01 Da PI: 9.9084 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 28.2 | 4e-09 | 4 | 55 | 25 | 75 |
NF-YC 25 rikkilkadedvkmis.aeaPvllskacelfileltlrswlhaeenkrrtlk 75 rikki++adedv +i+ a + l +ka elf+ +l r++ + + +t++ RcHm_v2.0_Chr1g0328631 4 RIKKIMQADEDVGKIAlAGIRLLKTKALELFLQDLCDRTYEITLQRGAKTMN 55 9**************9456777889**************9999888888876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 59 aa Download sequence |
MQVRIKKIMQ ADEDVGKIAL AGIRLLKTKA LELFLQDLCD RTYEITLQRG AKTMNSVQL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 4e-23 | NF-YC family protein |