PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0325721

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 340aa MW: 37535.5 Da PI: 10.0362

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0325721	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.7	9.8e-16	36	119	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +W++ v L+ea++ ++ +r+klk+++We+v++++ + + ++++qCk+k+e+++kry+ + +++ + s++p++ RcHm_v2.0_Chr1g0325721 36 EWSEGAVSSLLEAYEAKWVLRNRAKLKGHDWEDVARHVssraSCSKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYP 116 5***********************************854444455566679**************99997......4699999 PP trihelix 84 qle 86 +l+ RcHm_v2.0_Chr1g0325721 117 RLD 119 986 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MEKEGNQDQN PSLLSNNLES PRSKPLIGSD RLKRDEWSEG AVSSLLEAYE AKWVLRNRAK 60 LKGHDWEDVA RHVSSRASCS KSPKTQTQCK NKIESMKKRY RSESATADGS SWPLYPRLDL 120 LLRGSGPPPP TAAAAAATVV AAVATSPAPP QQPPLSAPLA HHSNHALMLL EPSVPVSSPP 180 QPPPPQPPPP HLGTAQNSYG SDGVDRDAKE DGVGMKLSDH ASDKNPLEID SSTPALYSDK 240 EKLRSKRMKR KIEKKTRRRR EELEIAESIR WLAEVVVRSE QSRMDTMRDI ERMRVEAEAK 300 RGEMDLKRTE IIANTQLEIA RIFAAGVGKG VDSSLRIGRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	2e-95	Trihelix family protein