PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0321431

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

M-type_MADS

Protein Properties

Length: 332aa MW: 37922.8 Da PI: 10.017

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0321431	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51.9	9.8e-17	48	87	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ t+ kR++g++KK +EL +LCd++++ ii+s+ RcHm_v2.0_Chr1g0321431 48 ITNDSARKATYKKRKKGLMKKVSELTTLCDIDACAIIYSP 87 89*************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MSALNRAESL QGKSKPERPF LHSLLPSLQH FHLFFLAMTR KKVKLAYITN DSARKATYKK 60 RKKGLMKKVS ELTTLCDIDA CAIIYSPYDS RPEIWPSPLG VQRVLAQFKT MPEMEQSKKM 120 VNQESFLRQR INKAQEQLKK QKKDNREKEM ARVMFQSLTG KSLQGLTLSD LTDLGWVIDQ 180 HLKELHLRMK NIKEEVVKSQ NQVKGAQGVS SAVADHRMVA MKSNIEDSGS NVAMKSGEEG 240 SSMQHAALDR QAFDHMHNME AMQLQMMHMA AQKQQNHWFM DMMNAPPQPP LPHPDSHEHM 300 GFTSEDMMLP FADHNHSTMW PNPPPAGGFN FP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	62	RKKVKLAYITNDSARKATYKKRK
2	59	63	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	3e-63	M-type_MADS family protein