PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0319011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 246aa MW: 28369.8 Da PI: 8.7627 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.8 | 1.9e-18 | 20 | 96 | 14 | 98 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l +p f+++++g+ +l+ ++g+ W+vkl + k + ++ kGWk+Fvk+n L+egDf+vF +dg+s f v++++ RcHm_v2.0_Chr1g0319011 20 EKLKMPTAFVNDFNGP----ALCKLRGPNGKCWDVKL--EEKNNDLFFHKGWKKFVKDNYLEEGDFLVFNYDGNSLF--SVTIYD 96 3488999999888766....4689*************..99999*****************************9988..777776 PP | |||||||
2 | B3 | 40.2 | 6e-13 | 150 | 227 | 11 | 94 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +++ +l +p a++ g+ +++t+ l+d+s+rsW v ++ +gr+++ kGW + kan++k g +vvF++++ + ++ RcHm_v2.0_Chr1g0319011 150 HRLYQLNIPIIIARAKGLM--SKRTIELRDPSNRSWPVAVT-PMEDGRTLMNKGWCDCYKANQIKKGNTVVFEFVKG---HVKL 227 4556789999999999887..4569***************4.5666779************************8763...2233 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MARSAPVPAF FQVLVGDFSE KLKMPTAFVN DFNGPALCKL RGPNGKCWDV KLEEKNNDLF 60 FHKGWKKFVK DNYLEEGDFL VFNYDGNSLF SVTIYDESAC EMDMEEAKRK RSTGGLVGQM 120 RDYVMPGETR LRIIEFKSEH LCFKRTMETH RLYQLNIPII IARAKGLMSK RTIELRDPSN 180 RSWPVAVTPM EDGRTLMNKG WCDCYKANQI KKGNTVVFEF VKGHVKLHIV RDEGYEVMLT 240 GPNIVY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 2e-20 | B3 family protein |