PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr0c19g0500131
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 216aa    MW: 24041.4 Da    PI: 4.4899
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr0c19g0500131genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.34.7e-173090357
                               --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               +R+++t+ ql++L+ l++    +yp+ e+++e++ +l    ++++++V++WFqN +a+e++
  RcHm_v2.0_Chr0c19g0500131 30 NRWAPTPPQLRILKGLYYDkgFKYPTPEQIQEISLHLkqygQIEDKNVFFWFQNLKARERQ 90
                               7****************96569*************************************97 PP
2Wus_type_Homeobox95.83.6e-312991364
          Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                               ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i+ +L++yG+iedkNVf+WFQN kaRerqk
  RcHm_v2.0_Chr0c19g0500131 29 NNRWAPTPPQLRILKGLYYdKGFKYPTPEQIQEISLHLKQYGQIEDKNVFFWFQNLKARERQK 91
                               78***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MEPQTLQLIE QQTQQQIEDG GNNQAAGTNN RWAPTPPQLR ILKGLYYDKG FKYPTPEQIQ  60
EISLHLKQYG QIEDKNVFFW FQNLKARERQ KLKEFRNVPV GGSLDLNFGS TSSTDDGRSI  120
DLNFGSRVGY GVDPYSSSPF NTNTSTTSFG TTGGQSFMEQ RGGDHQEIET LPLFPMHGED  180
IFGNMKTTSE GGSGYGDDSR ISLELSLNSY GDADMA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.19e-23WOX family protein