PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023929769.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 511aa MW: 53634.1 Da PI: 8.3822

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023929769.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023929769.1 66 FVCEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	15.7	4.2e-05	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ XP_023929769.1 142 WKCERCSKKYAVQSDWKAHMKTC 164 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MVELENSSPM AVSTASGEDG ISSSGCQTQN PPIPPLKKKR NLPGMPDPDA EVIALSPKTL 60 MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EIRKRVYVCP EPSCVHHNPS 120 RALGDLTGIK KHFCRKHGEK KWKCERCSKK YAVQSDWKAH MKTCGTREYK CDCGTMFARR 180 DSFITHRAFC DALAEESAKA RTLVISGSEG NVSANANVAV AVSVGVASPP QPPLTPSTTV 240 VSPDLSIQSS ELPENPIGLS VSAATTACLT TTAATTLSSS SSNTSVFASI FAPSTATTSF 300 SNVMSALSSS DSLTATNTTT HPQLSTLEPT SLSLSSTSLF LSNNGTSSLF PPQNQDHRHF 360 IPVSPLPAMS ATALLQKAAQ MGAASSNASL LRGFGLSTSS SSVQDGTGNA TQWNGHVIKT 420 ESTDGLGLGL PSDMMMGQSS PLGSQPMTRD LLGLGIGGGN GGNNGNPTGG LSALLNSFAG 480 GGFDVASYGG GDHSSPNDTW DGAPKDKNPM S

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MVELENSSPM AVSTASGEDG ISSSGCQTQN PPIPPLKKKR NLPGMPDPDA EVIALSPKTL  60
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EIRKRVYVCP EPSCVHHNPS  120
RALGDLTGIK KHFCRKHGEK KWKCERCSKK YAVQSDWKAH MKTCGTREYK CDCGTMFARR  180
DSFITHRAFC DALAEESAKA RTLVISGSEG NVSANANVAV AVSVGVASPP QPPLTPSTTV  240
VSPDLSIQSS ELPENPIGLS VSAATTACLT TTAATTLSSS SSNTSVFASI FAPSTATTSF  300
SNVMSALSSS DSLTATNTTT HPQLSTLEPT SLSLSSTSLF LSNNGTSSLF PPQNQDHRHF  360
IPVSPLPAMS ATALLQKAAQ MGAASSNASL LRGFGLSTSS SSVQDGTGNA TQWNGHVIKT  420
ESTDGLGLGL PSDMMMGQSS PLGSQPMTRD LLGLGIGGGN GGNNGNPTGG LSALLNSFAG  480
GGFDVASYGG GDHSSPNDTW DGAPKDKNPM S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-118	C2H2 family protein