PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023929658.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 873aa MW: 96672.6 Da PI: 4.5704

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023929658.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.6	1.9e-07	287	306	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C G++C+F H XP_023929658.1 287 ICDFFAK-GWCIKGSSCRFLH 306 8****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence
MPPSHDGEVH APAAASDSDN DDPEEPEYEE VEEEEEVEEY EEVEEYEEEE EEEEEVVEEV 60 EEEEEEVEMD VSDSRINADE ERNDVSQDME SEGNDGRLRS WHSSLEKAEV KIPSDTLAVK 120 ESGGNFIFSS PSNESLTTKK EESGLNYEDM KNIKSGKDLV TAEDSRSLEM VDEKDVEALP 180 EENASEDHSE SHSDTKGHLC NKEILNANTS FPSSINGNEM TDTIPMSSHS VEEANGVMNS 240 EEMKQMDLQS GDDKMRLAAR LAAPDTRTGG LSPGAEIKDG NDCPAVICDF FAKGWCIKGS 300 SCRFLHIKKG DSNSTTQKHE ADVASVNWKR EAQLDEGLRE ITERSMSPGF PEPLASSVGN 360 SSSHLETILH KDLGESQRWN EFHGQHKLPL LKKEDSSLCI TPDSQQLSSS KDDPSFVSRF 420 KDVGRDIQTL NWPADHASSN GTGSSMVRNS LLPEYGFSSS GSDLLSRNYR SGIFSSHSSS 480 MEEMASIRSQ HKHDDFTLPL RSHSRNLSSN TSLPTTGMLP SHSISTWTAS SSPFTFSSFS 540 MSHLGSQKLL DGEKECHASS SSSLLQFSSP FPTSESKNLP ITNVPLCSAE HKTKFSSNDW 600 EPSVPFRPSF FIPPMSISSP GSQYDPLRDS TESPKIGDES FNISLYGHGS SIMDKSHLQK 660 YGDSVLPGTL GPECNDDTTS VSSHNKFYDN VLEKRCHAIE RDSLATEADT GGTSVVDWKN 720 GTMPKEENLC STSHANDTTT PKRKLNDDHA SSHQNDGSRH KKDSKLSRAR QDNEMDVGPK 780 MDGNVHKESK AQRHFRAALI DLVKELLKPK WRDGHLSKDA HNMIVKKVVD KVLSTLQSHQ 840 IPPTMELVEQ YLSSFGSKIS KLVEGYVDKY GKS

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence

MPPSHDGEVH APAAASDSDN DDPEEPEYEE VEEEEEVEEY EEVEEYEEEE EEEEEVVEEV  60
EEEEEEVEMD VSDSRINADE ERNDVSQDME SEGNDGRLRS WHSSLEKAEV KIPSDTLAVK  120
ESGGNFIFSS PSNESLTTKK EESGLNYEDM KNIKSGKDLV TAEDSRSLEM VDEKDVEALP  180
EENASEDHSE SHSDTKGHLC NKEILNANTS FPSSINGNEM TDTIPMSSHS VEEANGVMNS  240
EEMKQMDLQS GDDKMRLAAR LAAPDTRTGG LSPGAEIKDG NDCPAVICDF FAKGWCIKGS  300
SCRFLHIKKG DSNSTTQKHE ADVASVNWKR EAQLDEGLRE ITERSMSPGF PEPLASSVGN  360
SSSHLETILH KDLGESQRWN EFHGQHKLPL LKKEDSSLCI TPDSQQLSSS KDDPSFVSRF  420
KDVGRDIQTL NWPADHASSN GTGSSMVRNS LLPEYGFSSS GSDLLSRNYR SGIFSSHSSS  480
MEEMASIRSQ HKHDDFTLPL RSHSRNLSSN TSLPTTGMLP SHSISTWTAS SSPFTFSSFS  540
MSHLGSQKLL DGEKECHASS SSSLLQFSSP FPTSESKNLP ITNVPLCSAE HKTKFSSNDW  600
EPSVPFRPSF FIPPMSISSP GSQYDPLRDS TESPKIGDES FNISLYGHGS SIMDKSHLQK  660
YGDSVLPGTL GPECNDDTTS VSSHNKFYDN VLEKRCHAIE RDSLATEADT GGTSVVDWKN  720
GTMPKEENLC STSHANDTTT PKRKLNDDHA SSHQNDGSRH KKDSKLSRAR QDNEMDVGPK  780
MDGNVHKESK AQRHFRAALI DLVKELLKPK WRDGHLSKDA HNMIVKKVVD KVLSTLQSHQ  840
IPPTMELVEQ YLSSFGSKIS KLVEGYVDKY GKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	5e-38	C3H family protein