PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023929543.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 182aa MW: 20168.8 Da PI: 8.4123 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 210 | 8.5e-65 | 4 | 153 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 d++ sse+vCyv+CnfCntilavsvP +slf++vtvrCGhC++llsvn+ ++q+++ ++ ++++++s + ++s+ ++ XP_023929543.1 4 DMMASSERVCYVHCNFCNTILAVSVPCSSLFNMVTVRCGHCANLLSVNMGATVQAVPPQDP---------------QKQHISSDDCGSSSKCNKF 83 57889**********************************************9999999885...............4556666666666666666 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+++ ++e pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_023929543.1 84 SAFE---AVEHEQPRMAP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 153 6644...55677788888.9****************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 182 aa Download sequence |
MSLDMMASSE RVCYVHCNFC NTILAVSVPC SSLFNMVTVR CGHCANLLSV NMGATVQAVP 60 PQDPQKQHIS SDDCGSSSKC NKFSAFEAVE HEQPRMAPIR PPEKRQRVPS AYNRFIKEEI 120 QRIKASNPDI SHREAFSTAA KNWAHFPHIH FGLKLDGNNK QGKLDQALAG TDQGSQKSNG 180 FY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-86 | YABBY family protein |