PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023928867.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 532aa MW: 55302 Da PI: 8.5935

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023928867.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023928867.1 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	11.1	0.0012	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_023928867.1 137 WKCDKCSKKYAVQSDWKAHSKIC 159 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MPVDLDNSST ASGEASVSSS GNQSQPPKPT AKKKRSLPGM PDPDAEVIAL SPKTLMATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEQSCV HHDPSRALGD 120 LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT 180 HRAFCDALAE ESARAQTQPV ANPNSESDTK IQAVDSSPPV PAPTPAPAPA PATAPAPAPS 240 PSPSPAPAQA QAPSAPPQPQ SSGVISSVLP IKSPELPENQ TQIVEETPVT AGLNGSCSST 300 TSSSSNGSTS CSVFANLFAS STASASLQTP QTHGFSDLIR AMAARPDPPA DLARPPSTEP 360 ISLCLSTNHG SSIFGTAGQE RRQYAPPPQP AMSATALLQK AAQMGAAATN ASLLRGFGIV 420 SSSSSSGQQD GLHWSQRQVE PDNASVPAGL GLGLHCDGGS GLKELMMGTP SVFGPKQTTL 480 DFLGLGMAAG GSTNSGLSAL ITSIGGGLDV AAAAAASFGG GEFTGKDIGR SS

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MPVDLDNSST ASGEASVSSS GNQSQPPKPT AKKKRSLPGM PDPDAEVIAL SPKTLMATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEQSCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARAQTQPV ANPNSESDTK IQAVDSSPPV PAPTPAPAPA PATAPAPAPS  240
PSPSPAPAQA QAPSAPPQPQ SSGVISSVLP IKSPELPENQ TQIVEETPVT AGLNGSCSST  300
TSSSSNGSTS CSVFANLFAS STASASLQTP QTHGFSDLIR AMAARPDPPA DLARPPSTEP  360
ISLCLSTNHG SSIFGTAGQE RRQYAPPPQP AMSATALLQK AAQMGAAATN ASLLRGFGIV  420
SSSSSSGQQD GLHWSQRQVE PDNASVPAGL GLGLHCDGGS GLKELMMGTP SVFGPKQTTL  480
DFLGLGMAAG GSTNSGLSAL ITSIGGGLDV AAAAAASFGG GEFTGKDIGR SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-154	C2H2 family protein