PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023928799.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24271.9 Da PI: 9.5981 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.3 | 1e-23 | 18 | 64 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i +ks r+vtfskRr g++KKA+EL++LC+ae+a+++fs+ gk++ + XP_023928799.1 18 ILSKSHRHVTFSKRRSGLFKKASELCTLCGAEIAIVVFSPAGKVFSF 64 779*****************************************988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MAKQNLSMGR KKTGCTKILS KSHRHVTFSK RRSGLFKKAS ELCTLCGAEI AIVVFSPAGK 60 VFSFGHPNVE PILDRFLTGN PNLGSKKKQL IEAHQNANVR ELNSYLTQII NQVEAEKKYG 120 EALGHIRRAN QRQCWWEAPI NELGLHELEQ LRVSIEELKK NVAKQANKIL FESTPNSLPH 180 LEMNGIEYVE FLESKLKVDA ASTIPNAYDV AYGDLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-52 | M-type_MADS family protein |