PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023927734.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 312aa    MW: 35093.3 Da    PI: 6.0768
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023927734.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-131156146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l++ vk++G+++W++I ++  + Rt+k+c++rw +
   XP_023927734.1 11 KGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 56
                     79*************************8887799**********87 PP
2Myb_DNA-binding41.72.7e-1367106344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +++ eE+   +++ +q+G++ W++Ia +++ gRt++++k++w
   XP_023927734.1  67 KFSVEEERVVIELQAQFGNK-WARIATYLP-GRTDNDVKNFW 106
                      799*****************.*********.*********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MEVKRDEGIR KGPWKAEEDE VLLNHVKKYG PRDWSSIRSK GLLQRTGKSC RLRWVNKLRP  60
NLKNGCKFSV EEERVVIELQ AQFGNKWARI ATYLPGRTDN DVKNFWSSRQ KRLARILQTS  120
GTANKPQKNK RAVQTCHDVP ASQAAKFSSS SEGESSSKAQ SGSSSCIENY EMIKMVPLTD  180
LLNPNLVYFG KSLGHQELSQ DEKNSCTESQ SQIPFSEIPQ PKPELTFSPE SQELLAKLED  240
PNIFDMFGTL DACELGNGAQ LPIGAQLFEP VGSCRSDAKE NIDDPITPDS FFDDFPTDVF  300
DHIEPHQSPS ER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.13e-77MYB family protein