PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023927434.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | C3H | ||||||||
Protein Properties | Length: 258aa MW: 29142.4 Da PI: 7.7453 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.9 | 2e-09 | 147 | 171 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +C++ +tG+C yGd+CkF+H+ XP_023927434.1 147 QPDICKDSKETGYCGYGDSCKFMHD 171 567888889***************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence |
KPTFLHSQKK TIKPDNNLYF STGSSKNTSS TAAKEESKKK PIFQFESSKE IQVEHDSRAT 60 VTLETETDFS RDARALGERS LKQAEEALKG KGKSSGDEKL YRGINGYTDY KAGFRREQRV 120 ASEKAGGAHG PLRASAHIRV SARFDYQPDI CKDSKETGYC GYGDSCKFMH DRGDYKSGWQ 180 MEKEWDEAEK VRKRNLALGL DDEDDGGVDP GEEDDDDDSL PFACFICRQP FVDAVVTKCK 240 HYFCKHCALK RRKAWSSM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-121 | C3H family protein |