PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023927233.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 220aa MW: 25960.3 Da PI: 8.1327

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023927233.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.3	6.2e-12	4	39	1	37
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 rg W + Ede+l ++v+++G+++W++Ia++++ gR++ XP_023927233.1 4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ-GRSE 39 899***************************.97 PP
2	Myb_DNA-binding	48.9	1.5e-15	38	77	5	46
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++eE+e+l+ ++ +G++ W+ Iar ++ gRt++ +k++w+ XP_023927233.1 38 SEEEEERLLASHRIHGNR-WAVIARLFP-GRTDNAVKNHWHV 77 79**************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MCTRGHWRPA EDEKLRELVE RYGPHNWNAI AEKLQGRSEE EEERLLASHR IHGNRWAVIA 60 RLFPGRTDNA VKNHWHVIMA RRCRERSKLY AKRAAQTLMN DQKSSLKQEV QMMNCEKRIT 120 TNASFVEKCR ERYQYPFMYN YCPPFPKDLF SQHLAPCINP RQEKKQPIEF YDFLQVNTES 180 NGSEVIDNPR RDDEEVDQEA KEQQSKAVVP FIDFLSAGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	1e-66	MYB family protein