PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023925334.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 413aa MW: 46588.7 Da PI: 10.0003

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023925334.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.5	8.2e-15	6	51	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++ Ed+ l+++v+ +G ++W +I++t++ +R++kqc++r+++ XP_023925334.1 6 RGPWSQSEDQYLLHLVNVHGAHNWVRISSTIQ-TRSPKQCRERFHQN 51 89****************************.*********986 PP
2	Myb_DNA-binding	36.6	1e-11	60	100	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + T+eE l+ + v+++G++ W+ Iar++ gR+++ +k++w+ XP_023925334.1 60 PITPEEGILIEQMVAEMGKR-WAEIARRLR-GRSDNAVKNWWN 100 669***************.*****.*********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MPQHKRGPWS QSEDQYLLHL VNVHGAHNWV RISSTIQTRS PKQCRERFHQ NLKPSLNHDP 60 ITPEEGILIE QMVAEMGKRW AEIARRLRGR SDNAVKNWWN GGMNRRRRSN NHRRTDVDAQ 120 RSSTTSSNTI PQGEPIQAQI QSHHHALPPQ FVQQVQQPLP QAIMPQQFFS HPMYHPSQIH 180 GLQPHMGVPS TMPMYQRHPG MVETPLPSPS AFSQMSADGA PSLISDCSSI STRSPHDGTS 240 PIELPPLSGS RDERRHSSAP MLRLGVPGTF VSDTDFQGQP MMIKARHEQH HMMHEVPFMQ 300 QQQQFQPHVY LPSQPRQPSP LQHAPMMPPQ HYHAVAQQMQ RTQIYLPQQP LPSTPMQLPS 360 ISKLSTPTDA KLNTASGTGI FIDPAQDIHS PVVTLSTPEG SPKDKMSLSN LTH

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MPQHKRGPWS QSEDQYLLHL VNVHGAHNWV RISSTIQTRS PKQCRERFHQ NLKPSLNHDP  60
ITPEEGILIE QMVAEMGKRW AEIARRLRGR SDNAVKNWWN GGMNRRRRSN NHRRTDVDAQ  120
RSSTTSSNTI PQGEPIQAQI QSHHHALPPQ FVQQVQQPLP QAIMPQQFFS HPMYHPSQIH  180
GLQPHMGVPS TMPMYQRHPG MVETPLPSPS AFSQMSADGA PSLISDCSSI STRSPHDGTS  240
PIELPPLSGS RDERRHSSAP MLRLGVPGTF VSDTDFQGQP MMIKARHEQH HMMHEVPFMQ  300
QQQQFQPHVY LPSQPRQPSP LQHAPMMPPQ HYHAVAQQMQ RTQIYLPQQP LPSTPMQLPS  360
ISKLSTPTDA KLNTASGTGI FIDPAQDIHS PVVTLSTPEG SPKDKMSLSN LTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	2e-23	MYB family protein