PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023924595.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 633aa MW: 72299.1 Da PI: 4.8692

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023924595.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	305	326	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 + C Cgk F++ + k+H ++ XP_023924595.1 305 FYCVVCGKKFKSDKQWKNHEQS 326 78*****************876 PP
2	zf-C2H2	11.3	0.0011	604	622	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C Cg+ F ++ L++H+ XP_023924595.1 604 TCDTCGEEFESRTKLHKHL 622 6*****************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence
MESAAKRCHY EVLGLSRDCA AEEIRSAYKK LALQRHPDKL VQSGLSHAEA TAQFQELAQA 60 YEVLSDPKER AWYDSHRSQI LFSDLNSNSV APNSAIPNLF SFFSNTVFSG YSDSGRGFYK 120 VYSDLFDKIY ANEINFARKL GLVLNKEVPL MGNLESPYVQ VTAFYNYWLG FCTVMDFCWA 180 DQYDAMAGVN RKSRRVMEEE NKKVRKKARR EYNDTIRGLA EFVKKRDKRV IDMAVKRNLE 240 MERKKEEERE RKKRLEKERI EKAKAYVEPE WTRVDEEDLE GDGKGMEVEE EEEEEEEEER 300 KRKEFYCVVC GKKFKSDKQW KNHEQSKKHK EKVAEFRDSL GDEEEGDQDI GEEEERVVDE 360 IGERIKDELE IGDKDREDEE NGVGFQDVED TNEVGGGEES DGDGVDDDDD DEMGVLEAMV 420 AGRKSRKNLG SRSEEKAAAW SEVHVEDESD GVELPKSRNN VGSRREEKAA AWSEVRVEDE 480 SDGVDFMEYN NTKSKRKSRR SKKNGGEATR DVTNEINRQS EEGESNGHDH SNLEEEESSS 540 HSVVENENNG NGNYKGGDQL ARDKKTSNQH VDKKGAGKKD TSAKSKNSSK GKNAKATSKN 600 SSNTCDTCGE EFESRTKLHK HLGESGHATL KYR

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence

MESAAKRCHY EVLGLSRDCA AEEIRSAYKK LALQRHPDKL VQSGLSHAEA TAQFQELAQA  60
YEVLSDPKER AWYDSHRSQI LFSDLNSNSV APNSAIPNLF SFFSNTVFSG YSDSGRGFYK  120
VYSDLFDKIY ANEINFARKL GLVLNKEVPL MGNLESPYVQ VTAFYNYWLG FCTVMDFCWA  180
DQYDAMAGVN RKSRRVMEEE NKKVRKKARR EYNDTIRGLA EFVKKRDKRV IDMAVKRNLE  240
MERKKEEERE RKKRLEKERI EKAKAYVEPE WTRVDEEDLE GDGKGMEVEE EEEEEEEEER  300
KRKEFYCVVC GKKFKSDKQW KNHEQSKKHK EKVAEFRDSL GDEEEGDQDI GEEEERVVDE  360
IGERIKDELE IGDKDREDEE NGVGFQDVED TNEVGGGEES DGDGVDDDDD DEMGVLEAMV  420
AGRKSRKNLG SRSEEKAAAW SEVHVEDESD GVELPKSRNN VGSRREEKAA AWSEVRVEDE  480
SDGVDFMEYN NTKSKRKSRR SKKNGGEATR DVTNEINRQS EEGESNGHDH SNLEEEESSS  540
HSVVENENNG NGNYKGGDQL ARDKKTSNQH VDKKGAGKKD TSAKSKNSSK GKNAKATSKN  600
SSNTCDTCGE EFESRTKLHK HLGESGHATL KYR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	191	228	RKSRRVMEEENKKVRKKARREYNDTIRGLAEFVKKRDK
2	202	210	KKVRKKARR
3	300	330	RKRKEFYCVVCGKKFKSDKQWKNHEQSKKHK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-146	C2H2 family protein