PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023924375.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 530aa    MW: 59218.4 Da    PI: 4.6865
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023924375.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.31.9e-1081545231374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPil 91 
                     lv+lLl+cAeav  +d+ la+++L+++   asp gd++qR+  +f+ +L++rl+   ++  +  + ++ ++++     +e+  a++l+++++P++
  XP_023924375.1 154 LVHLLLACAEAVGCRDTLLADSILNQIWVSASPWGDSLQRVSYCFATGLKSRLSL-LHNANANGTFTNGAKEKplitREEKSEAFQLLYQTTPYI 247
                     68***************************************************98.333332223333333334676899999************ PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.r 185
                      f++++aN+aI +a++g++ +Hi D+++++ lQWp+L+++LasRpegpp+lRiTg+ s  ++   ele   + L + A++lg+++efn++    +
  XP_023924375.1 248 AFGFMAANEAICQAAKGKDSLHIMDIGMENTLQWPSLIRTLASRPEGPPNLRITGLIS--EHYLSELEVSMKILVDDASTLGLTLEFNMISGPvT 340
                     **********************************************************..55999999999******************844458 PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      + l+ e+L++++gE+l Vn++++lh++++es  + +   ++L+++k+l+P+v++vveq+a+hn++ Fl rf+e+l+yysa+fdslea+l r+s 
  XP_023924375.1 341 PSVLTKESLNLREGETLFVNSIMHLHEFVKESRGTLK---AILQAIKKLRPTVLTVVEQDANHNGPFFLGRFVESLHYYSAIFDSLEASLTRNSA 432
                     8999*************************98888888...9****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +r+k+E   +++ei+n+va ega+r+erhe+  +Wr++l++aGF+ + +  k ++qak+l++ ++ dgy++ +e+g+l+lgWk+rp++ +SaW+
  XP_023924375.1 433 QRMKIEFL-FAEEIRNIVAFEGANRVERHERIDQWRRQLGRAGFQVMGM--KCMSQAKMLVSVYGCDGYTLSSEKGCLLLGWKGRPIILASAWQ 523
                     *****965.************************************9876..68****************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    
MAALNGWSSF PMHDNLDHDL AIRRFCPARV EQEHGECEWE DELLNELELC SPSNTTTIPC  60
LPAPEVDKFV DSCINMDHYE IEGSNLQHDF DLFQEETETF SLVNNVYGDA SMMIEGDGLE  120
MSGSFEDFGV LDPEMVPSVQ EEVSHGDLNQ GLHLVHLLLA CAEAVGCRDT LLADSILNQI  180
WVSASPWGDS LQRVSYCFAT GLKSRLSLLH NANANGTFTN GAKEKPLITR EEKSEAFQLL  240
YQTTPYIAFG FMAANEAICQ AAKGKDSLHI MDIGMENTLQ WPSLIRTLAS RPEGPPNLRI  300
TGLISEHYLS ELEVSMKILV DDASTLGLTL EFNMISGPVT PSVLTKESLN LREGETLFVN  360
SIMHLHEFVK ESRGTLKAIL QAIKKLRPTV LTVVEQDANH NGPFFLGRFV ESLHYYSAIF  420
DSLEASLTRN SAQRMKIEFL FAEEIRNIVA FEGANRVERH ERIDQWRRQL GRAGFQVMGM  480
KCMSQAKMLV SVYGCDGYTL SSEKGCLLLG WKGRPIILAS AWQVHNVLST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.19e-82GRAS family protein