PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023924034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 209aa MW: 23907.4 Da PI: 9.5083 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.9e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd++l+ ++k +G g+W++I++ g+ R++k+c++rw +yl XP_023924034.1 14 KGTWTREEDQRLIAYIKAHGEGCWRSIPKAAGLLRCGKSCRLRWINYL 61 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.8 | 2.4e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eEd l+++++ +lG++ W++Ia++++ gRt++++k++w+++l XP_023924034.1 67 RGNFTNEEDNLIIKLHSLLGNK-WSLIASRLP-GRTDNEIKNYWNSHL 112 89********************.*********.************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence |
MGRSPCCDKS LTNKGTWTRE EDQRLIAYIK AHGEGCWRSI PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TNEEDNLIIK LHSLLGNKWS LIASRLPGRT DNEIKNYWNS HLRRKLLSRG 120 IDPLTHKPIN TDTDKGEKFM DGFGCKIEKN PVEKSLTELN LELRIGPPNQ HPPLPLERKE 180 KKVCFYCSLG LENSKYCTCG SSSNSTNDF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38620.1 | 8e-90 | MYB family protein |