PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023923838.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 633aa MW: 70774.2 Da PI: 5.8199

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023923838.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.8	1.6e-12	434	480	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h +Err R+++N++f Lr+++P+ + K +K++iL A+eY+k+L+ XP_023923838.1 434 NHALAERRQREKLNERFLILRSMVPSiL------KDDKVTILDTAIEYLKELE 480 899*********************88......**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence
MEERVPANLK RQLALAVRSI QWSYAIFWSI SARQPGVLKW GDGYYNGDIK TRKTIQTMEL 60 NSDQLGLQRS EQLRELYESL SAGEASPQAR RPSVALSPED LSDTEWYYLV CMSFMFDIGQ 120 GLPGRTLAKG QSIWLCNAHF ADSKVFSRSL LAKSASIQTV VCFPFLGGVI ELGVTELVLE 180 DPGFIQHIKT SFLETPYPIV SKKFVAAGNT RNDRNVACAV FDQDILDNKL IHLGCEELDI 240 ISPNNSSNGF ETNLPAENSF MIEGKNGGTS QVQSWQFMDD EFSNCVHHSM NSSDCISQTF 300 VDHEKAVSAP KGELLNNHSL QDLQECNHKK MNSLDLLSDD VHYQSVLSSL LKTSDQLILG 360 PQFRNCHQET SFVSWNKGGL AHCQNPVGGT PQKLLKKALF EVPRMYVGDL PQSPEDNGYK 420 DGAWRPEADE IGMNHALAER RQREKLNERF LILRSMVPSI LKDDKVTILD TAIEYLKELE 480 RRVGDLESCK ELTEVEAKTK LKPQDTVERT SDNYGNNKSN NSKKPPINKR KACDIDQMET 540 EINYAVSNDG LTDNVIVSIT NKTVLIEMRC PGREGVLLEI MDSVSKLQLD CHSVQSSTIE 600 GIISLTIKSR FKGSAVASAG TIKQALQRFT LRC

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence

MEERVPANLK RQLALAVRSI QWSYAIFWSI SARQPGVLKW GDGYYNGDIK TRKTIQTMEL  60
NSDQLGLQRS EQLRELYESL SAGEASPQAR RPSVALSPED LSDTEWYYLV CMSFMFDIGQ  120
GLPGRTLAKG QSIWLCNAHF ADSKVFSRSL LAKSASIQTV VCFPFLGGVI ELGVTELVLE  180
DPGFIQHIKT SFLETPYPIV SKKFVAAGNT RNDRNVACAV FDQDILDNKL IHLGCEELDI  240
ISPNNSSNGF ETNLPAENSF MIEGKNGGTS QVQSWQFMDD EFSNCVHHSM NSSDCISQTF  300
VDHEKAVSAP KGELLNNHSL QDLQECNHKK MNSLDLLSDD VHYQSVLSSL LKTSDQLILG  360
PQFRNCHQET SFVSWNKGGL AHCQNPVGGT PQKLLKKALF EVPRMYVGDL PQSPEDNGYK  420
DGAWRPEADE IGMNHALAER RQREKLNERF LILRSMVPSI LKDDKVTILD TAIEYLKELE  480
RRVGDLESCK ELTEVEAKTK LKPQDTVERT SDNYGNNKSN NSKKPPINKR KACDIDQMET  540
EINYAVSNDG LTDNVIVSIT NKTVLIEMRC PGREGVLLEI MDSVSKLQLD CHSVQSSTIE  600
GIISLTIKSR FKGSAVASAG TIKQALQRFT LRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	0.0	bHLH family protein