PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023923506.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 364aa MW: 39545.4 Da PI: 7.7117

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023923506.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.3	3.6e-10	89	113	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_023923506.1 89 FKTKLCCKFRA-GTCPYVTNCNFAHS 113 69*******.***********8 PP
2	zf-CCCH	18.5	3.5e-06	163	188	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_023923506.1 163 YKGRHCKKFYTEEGCPYGDNCTFLHD 188 78888********************7 PP
3	zf-CCCH	42.2	1.3e-13	244	269	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_023923506.1 244 WKTRICNKWELTGYCPFGSKCHFAHG 269 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MDFSGGNVVQ VITGSGPENW SVNDNAMWAT EDDYRAWSNN NGDDTPSNSN YDQRQSQSRS 60 GSEPPNKKSK NSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYVTNCNF AHSIEELRRP 120 PPNWQEIVAQ HEEEKGVSSE PREEYQIPSL GSANFVGDSQ RSYKGRHCKK FYTEEGCPYG 180 DNCTFLHDEQ SKNRESVAIS LGPGGYGGAA ASPVSGPNAK PSTGGYGGAA ASPVSGPNAK 240 PSNWKTRICN KWELTGYCPF GSKCHFAHGA AELHRYGGGL VEGETRDSSS APPDSKQGGV 300 PSKTPADSVV VSVAPVPHSD VYHMGVPSQR SSIVIQRPGQ RTHQKWKGPD KISRIYGDWI 360 DDIE

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MDFSGGNVVQ VITGSGPENW SVNDNAMWAT EDDYRAWSNN NGDDTPSNSN YDQRQSQSRS  60
GSEPPNKKSK NSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYVTNCNF AHSIEELRRP  120
PPNWQEIVAQ HEEEKGVSSE PREEYQIPSL GSANFVGDSQ RSYKGRHCKK FYTEEGCPYG  180
DNCTFLHDEQ SKNRESVAIS LGPGGYGGAA ASPVSGPNAK PSTGGYGGAA ASPVSGPNAK  240
PSNWKTRICN KWELTGYCPF GSKCHFAHGA AELHRYGGGL VEGETRDSSS APPDSKQGGV  300
PSKTPADSVV VSVAPVPHSD VYHMGVPSQR SSIVIQRPGQ RTHQKWKGPD KISRIYGDWI  360
DDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-131	C3H family protein